RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 RAG1P15918 1043 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 VHLP40337 213 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 CD86P42081 329 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 CLCNKBP51801 687 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 EPHB3P54753 998 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 CTBP1Q13363 440 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 INPP5AQ14642 412 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 PCBP1Q15365 356 aaKnown RBP eCLIP13.45□□□□□ -0.26
NPHP4-203ENST00000378169 PDK4Q16654 411 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 SPATA6LQ8N4H0 392 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 BRI3BPQ8WY22 251 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 PCDHB8Q9UN66 801 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 STXBP5LQ9Y2K9 1186 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 NUP188Q5SRE5 1749 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 NUP98P52948 1817 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 PIGNO95427 931 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 KRT16P08779 473 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 HDAC4P56524 1084 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 FKBP1BP68106 108 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 NOL9Q5SY16 702 aaKnown RBP13.45□□□□□ -0.26
NPHP4-203ENST00000378169 CCDC126Q96EE4 140 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 ZNF333Q96JL9 665 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 OMDQ99983 421 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 IL22Q9GZX6 179 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 VPS9D1Q9Y2B5 631 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 MYBPHLA2RUH7 354 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 PLD1Q13393 1074 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 CYLC2Q14093 348 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-203ENST00000378169 TCHHL1Q5QJ38 904 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-203ENST00000378169 CLEC4CQ8WTT0 213 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 ASPSCR1Q9BZE9 553 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 RIC8BQ9NVN3 520 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 ACTL7BQ9Y614 415 aa13.45□□□□□ -0.26
NPHP4-203ENST00000378169 PRPF4O43172 522 aaKnown RBP eCLIP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CLASP2O75122 1294 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TMCC1O94876 653 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 GUCA1CO95843 209 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ASGR1P07306 291 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ASPAP45381 313 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 GDF10P55107 478 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ARHGAP1Q07960 439 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CCL14Q16627 93 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ANKRD23Q86SG2 305 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 YAF2Q8IY57 180 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TOP6BLQ8N6T0 577 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CXorf38Q8TB03 319 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 FOPNLQ96NB1 174 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 KLHL5Q96PQ7 755 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ADGRE3Q9BY15 652 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 FBXO6Q9NRD1 293 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 DOT1LQ8TEK3 1739 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ALS2Q96Q42 1657 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 FAM95CA0A1B0GW59 222 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 SYCE1LA8MT33 242 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ZCCHC18P0CG32 403 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 NOVP48745 357 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 HADHBP55084 474 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 FNBP1LQ5T0N5 605 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PIWIL2Q8TC59 973 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 NRBF2Q96F24 287 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 NDNQ99608 321 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 MTIF3Q9H2K0 278 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 SYTL2Q9HCH5 934 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ENTPD7Q9NQZ7 604 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 AAASQ9NRG9 546 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 SYBUQ9NX95 663 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PACSIN3Q9UKS6 424 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 MDM4O15151 490 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 MFSD11O43934 449 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 MTA2O94776 668 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ALADP13716 330 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PPP3CCP48454 512 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TUSC3Q13454 348 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CHADLQ6NUI6 762 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 THUMPD3Q9BV44 507 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PRKD2Q9BZL6 878 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 RNF39Q9H2S5 420 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PIF1Q9H611 641 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 MAN1C1Q9NR34 630 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 COL1A2P08123 1366 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TRPM3Q9HCF6 1732 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PTPRJQ12913 1337 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TMEM247A6NEH6 219 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 C2CD4BA6NLJ0 364 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TULP2O00295 520 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PROCP04070 461 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ATP6V1B1P15313 513 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ATP5C1P36542 298 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 PRKAA1Q13131 559 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 ITGA7Q13683 1181 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TTLL9Q3SXZ7 439 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CCDC153Q494R4 210 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 SH3D19Q5HYK7 790 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CERCAMQ5T4B2 595 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 KYAT3Q6YP21 454 aaKnown RBP13.44□□□□□ -0.26
NPHP4-203ENST00000378169 TPGS1Q6ZTW0 290 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 STRADAQ7RTN6 431 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CLEC4FQ8N1N0 589 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CCDC185Q8N715 623 aa13.44□□□□□ -0.26
NPHP4-203ENST00000378169 CNDP1Q96KN2 507 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms