RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 HLTFQ14527 1009 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP4-202ENST00000351842 PPP2R5DQ14738 602 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 DPYSL2Q16555 572 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 BRMS1LQ5PSV4 323 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 MSANTD2Q6P1R3 559 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 CAPN12Q6ZSI9 719 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 PRELID2Q8N945 189 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 CDK5RAP1Q96SZ6 601 aaKnown RBP9.46□□□□□ -0.9
USP4-202ENST00000351842 LRRC1Q9BTT6 524 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 KLC2Q9H0B6 622 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 ATP13A1Q9HD20 1204 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 POLR3BQ9NW08 1133 aaPredicted RBP9.46□□□□□ -0.9
USP4-202ENST00000351842 HBS1LQ9Y450 684 aaKnown RBP9.46□□□□□ -0.9
USP4-202ENST00000351842 ATG2AQ2TAZ0 1938 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 CACNA1HO95180 2353 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 K7ERQ8 282 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 RAMP2O60895 175 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 IGLV3-25P01717 112 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 HOXA9P31269 272 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 SCNN1AP37088 669 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 SLC6A11P48066 632 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 STK19P49842 368 aaPredicted RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 SEMG2Q02383 582 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 OLIG2Q13516 323 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 POLD3Q15054 466 aaPredicted RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 NCBP2-AS2Q69YL0 99 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 C8orf74Q6P047 294 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 TTC27Q6P3X3 843 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 VITQ6UXI7 678 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 CCDC25Q86WR0 208 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 GPR65Q8IYL9 337 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 ATPAF2Q8N5M1 289 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 CELF5Q8N6W0 485 aaKnown RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 CCDC89Q8N998 374 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 PBKQ96KB5 322 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 S1PR5Q9H228 398 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 SP110Q9HB58 689 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 HEBP1Q9NRV9 189 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 DTLQ9NZJ0 730 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 NDRG2Q9UN36 371 aaKnown RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 GOLGA4Q13439 2230 aaKnown RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 EP300Q09472 2414 aaPredicted RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 TBC1D3BA6NDS4 549 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 C3orf70A6NLC5 250 aaPredicted RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 WASH3PC4AMC7 463 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 JCHAINP01591 159 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 CD70P32970 193 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 BASP1P80723 227 aaKnown RBP9.45□□□□□ -0.9
USP4-202ENST00000351842 ACAP1Q15027 740 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 PCSK7Q16549 785 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 CTC1Q2NKJ3 1217 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 C2orf27AQ580R0 203 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 RABGAP1LQ5R372 815 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 APCDD1Q8J025 514 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 SLC39A8Q9C0K1 460 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 ARHGAP26Q9UNA1 814 aa9.45□□□□□ -0.9
USP4-202ENST00000351842 USP12O75317 370 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 MT-CO1P00395 513 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 GKP32189 559 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 CSKP41240 450 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 PPP3CCP48454 512 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 PAPOLAP51003 745 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 PPARDQ03181 441 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 BYSLQ13895 437 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 TFDP2Q14188 446 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 PDK2Q15119 407 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 RHBDF2Q6PJF5 856 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 C12orf40Q86WS4 652 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 UBXN4Q92575 508 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 CHFRQ96EP1 664 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 TRMT61BQ9BVS5 477 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 TNKS2Q9H2K2 1166 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 CATSPERBQ9H7T0 1116 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 ARHGEF38Q9NXL2 777 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 KLHL8Q9P2G9 620 aaPredicted RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 SNX24Q9Y343 169 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 A8MX80 341 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 MBTPS2O43462 519 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 BMP1P13497 986 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 CHKAP35790 457 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 MTHFRP42898 656 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 CTSOP43234 321 aaPredicted RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 LMAN1P49257 510 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 GUCY2DQ02846 1103 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 SPARCL1Q14515 664 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 ELF2Q15723 593 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 LRRC73Q5JTD7 316 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 EMC10Q5UCC4 262 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 OVCA2Q8WZ82 227 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 PLD4Q96BZ4 506 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 MSLNLQ96KJ4 702 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 PWWP2AQ96N64 755 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 KCNK12Q9HB15 430 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 GPR179Q6PRD1 2367 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 RIF1Q5UIP0 2472 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 RAD51CO43502 376 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 ADCY8P40145 1251 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 SLC7A9P82251 487 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 DHCR24Q15392 516 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 HEATR6Q6AI08 1181 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms