RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CAPSLQ8WWF8 208 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 DDX1Q92499 740 aaKnown RBP8.3□□□□□ -1.08
ATG4A-201ENST00000343524 TFAP2CQ92754 450 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 COA7Q96BR5 231 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 EYA3Q99504 573 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 FAM118BQ9BPY3 351 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 C17orf80Q9BSJ5 609 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 ADAMTS10Q9H324 1103 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 COQ10BQ9H8M1 238 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 POLR1BQ9H9Y6 1135 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 FKBP14Q9NWM8 211 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 PKD2L2Q9NZM6 624 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 PSME2Q9UL46 239 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 TMA7Q9Y2S6 64 aaKnown RBP8.3□□□□□ -1.08
ATG4A-201ENST00000343524 IVNS1ABPQ9Y6Y0 642 aa8.3□□□□□ -1.08
ATG4A-201ENST00000343524 ZNFX1Q9P2E3 1918 aaKnown RBP8.3□□□□□ -1.08
ATG4A-201ENST00000343524 C7orf72A4D263 438 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ACOX3O15254 700 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 CHADO15335 359 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 AKAP10O43572 662 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SCO2O43819 266 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 RFPL1O75677 317 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ERBB2P04626 1255 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SPATA31C1P0DKV0 1188 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 JUNBP17275 347 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 XRCC1P18887 633 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 MX2P20592 715 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 TGM1P22735 817 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SLC7A1P30825 629 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 POLR2BP30876 1174 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 RFC1P35251 1148 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GJC1P36383 396 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ELK3P41970 407 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 NOVP48745 357 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 HARS2P49590 506 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 TAS2R40P59535 323 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 EIF3EP60228 445 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GCNT1Q02742 428 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GNA12Q03113 381 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ENPEPQ07075 957 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 KCNA1Q09470 495 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SELENBP1Q13228 472 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ART3Q13508 389 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 NFIXQ14938 502 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SNX17Q15036 470 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ZYXQ15942 572 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 UBE2SQ16763 222 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 PARP10Q53GL7 1025 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 MAMDC4Q6UXC1 1216 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ZBTB49Q6ZSB9 765 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 MON1BQ7L1V2 547 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 TAS2R42Q7RTR8 314 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 DSELQ8IZU8 1212 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 NDUFAF2Q8N183 169 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 PARP8Q8N3A8 854 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 CNTD1Q8N815 330 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 PPM1NQ8N819 430 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 XXYLT1Q8NBI6 393 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GOLM1Q8NBJ4 401 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GRPEL2Q8TAA5 225 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 CHAC2Q8WUX2 184 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 AFG1LQ8WV93 481 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SEPT8Q92599 483 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 CELF1Q92879 486 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 KREMEN1Q96MU8 473 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 CDRT15Q96T59 188 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 TCF12Q99081 682 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SLC13A1Q9BZW2 595 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 HOXD1Q9GZZ0 328 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 UPF3AQ9H1J1 476 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 PDZD7Q9H5P4 517 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 RETREG1Q9H6L5 497 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 WDR41Q9HAD4 459 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 EFCAB1Q9HAE3 211 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SIAEQ9HAT2 523 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 IL21Q9HBE4 155 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 RNF186Q9NXI6 227 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 DCDC2Q9UHG0 476 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 TEX264Q9Y6I9 313 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 DDX60LQ5H9U9 1706 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 LOC100653049A0A140TA62 436 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ISPDA4D126 451 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 SAC3D1A6NKF1 404 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 AIM2O14862 343 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 MAN1A2O60476 641 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GUCY1B2O75343 617 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 BANF1O75531 89 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 RNASEH2AO75792 299 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 KRT34O76011 436 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 FKBP9O95302 570 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 CELF2O95319 508 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 UBL4AP11441 157 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 KRT10P13645 584 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 ETS1P14921 441 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 PTPN1P18031 435 aaKnown RBP8.29□□□□□ -1.08
ATG4A-201ENST00000343524 PIK3R1P27986 724 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GRIK1P39086 918 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GPD2P43304 727 aa8.29□□□□□ -1.08
ATG4A-201ENST00000343524 GYG1P46976 350 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms