RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 GIMAP7Q8NHV1 300 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 DQX1Q8TE96 717 aaKnown RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 MCUR1Q96AQ8 359 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 NSL1Q96IY1 281 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 SPC25Q9HBM1 224 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 IARS2Q9NSE4 1012 aaKnown RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 EMCNQ9ULC0 261 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 PRG3Q9Y2Y8 225 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 FAM155AB1AL88 458 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 ODC1P11926 461 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 MAP2K2P36507 400 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 AVPR1AP37288 418 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 CCNFP41002 786 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 IRF9Q00978 393 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 KCNA10Q16322 511 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 VWA5B1Q5TIE3 1220 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 OVOS1Q6IE37 1185 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 METTL23Q86XA0 190 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 TMEM86AQ8N2M4 240 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 DCLK2Q8N568 766 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 IPMKQ8NFU5 416 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 SKA1Q96BD8 255 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 C20orf96Q9NUD7 363 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 NDFIP2Q9NV92 336 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 ABI2Q9NYB9 513 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 MPP6Q9NZW5 540 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 TSC2P49815 1807 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 SCN10AQ9Y5Y9 1956 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 GPR182O15218 404 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 CCND3P30281 292 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 OCRLQ01968 901 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 ITGA9Q13797 1035 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 BHLHA9Q7RTU4 235 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 PNPOQ9NVS9 261 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 MEI4A8MW99 385 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 CCND1P24385 295 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 NMBRP28336 390 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 GARSP41250 739 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 ARPP19P56211 112 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 MXRA7P84157 204 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 POU6F1Q14863 301 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 TEX44Q53QW1 395 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 RGMBQ6NW40 437 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 ATG14Q6ZNE5 492 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 MARK2Q7KZI7 788 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 DTX3LQ8TDB6 740 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SOCS4Q8WXH5 440 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 N4BP2L2Q92802 583 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 ATP2A3Q93084 1043 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 CLPTM1LQ96KA5 538 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 OXCT2Q9BYC2 517 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 NOP53Q9NZM5 478 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SIRPGQ9P1W8 387 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 B2RBV5 119 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 GSTA2P09210 222 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 MLNP12872 115 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 GPR15P49685 360 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 PRKCZQ05513 592 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 EML3Q32P44 896 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 WLSQ5T9L3 541 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 STEAP4Q687X5 459 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 BNIPLQ7Z465 357 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SERINC5Q86VE9 423 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF354CQ86Y25 554 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SPATA6LQ8N4H0 392 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 POU5F2Q8N7G0 328 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 INPP5DQ92835 1189 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SNX15Q9NRS6 342 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 PCDH10Q9P2E7 1040 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 IGSF9Q9P2J2 1179 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 GIT1Q9Y2X7 761 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 HBS1LQ9Y450 684 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 DNAH14Q0VDD8 3507 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 B4GALT3O60512 393 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 CCDC22O60826 627 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 DNAJC6O75061 913 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 PMPCBO75439 489 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 AP2A1O95782 977 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 GLRBP48167 497 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 PPIDQ08752 370 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SEMA3BQ13214 749 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 INTS6LQ5JSJ4 861 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 MFSD14CQ5VZR4 134 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 BTBD8Q5XKL5 378 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 TRIM68Q6AZZ1 485 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 ZNF398Q8TD17 642 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 LRRC40Q9H9A6 602 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 DMAP1Q9NPF5 467 aaPredicted RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 TAS2R1Q9NYW7 299 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 SLC39A10Q9ULF5 831 aa10.57□□□□□ -0.72
LIMA1-201ENST00000341247 G3BP2Q9UN86 482 aaKnown RBP10.57□□□□□ -0.72
LIMA1-201ENST00000341247 PRR5-ARHGAP8B1AHC4 643 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PHGDHO43175 533 aaKnown RBP10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PLIN3O60664 434 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 PEX11AO75192 247 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 ALDH1A2O94788 518 aa10.56□□□□□ -0.72
LIMA1-201ENST00000341247 TOMM70O94826 608 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms