RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PARP6Q2NL67 630 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 MTHFD1LQ6UB35 978 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ZNF567Q8N184 647 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP1-201ENST00000339950 CERS2Q96G23 380 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 CAMKK2Q96RR4 588 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 HBEGFQ99075 208 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 TRIM8Q9BZR9 551 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ASB7Q9H672 318 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 SNX13Q9Y5W8 968 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 STRCQ7RTU9 1775 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 A0A0A0MRY4 1105 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 CHADO15335 359 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ATXN8OSP0DMR3 200 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 OAZ1P54368 228 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 RALGDSQ12967 914 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ACVR2BQ13705 512 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 AMIGO2Q86SJ2 522 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ATPAF2Q8N5M1 289 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 SPATA13Q96N96 652 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FTHL17Q9BXU8 183 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FZD8Q9H461 694 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 COG4Q9H9E3 785 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 NT5MQ9NPB1 228 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ARHGEF4Q9NR80 690 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 RBM22Q9NW64 420 aaKnown RBP eCLIP12.2□□□□□ -0.462e-8■□□□□ 9.5
USP1-201ENST00000339950 OR12D3Q9UGF7 316 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FARP1Q9Y4F1 1045 aaPredicted RBP12.2□□□□□ -0.46
USP1-201ENST00000339950 XIRP1Q702N8 1843 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 SMIM28A0A1B0GU29 152 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 ERI2A8K979 691 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 A8MX80 341 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 TRDMT1O14717 391 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 C22orf31O95567 290 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 VAV1P15498 845 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 SKIV2L2P42285 1042 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 EXOC8Q8IYI6 725 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 ATP6V1E2Q96A05 226 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 RCN3Q96D15 328 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 LENG8Q96PV6 779 aaPredicted RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 EPAS1Q99814 870 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 MRPL46Q9H2W6 279 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 CYP3A43Q9HB55 503 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 KANSL3Q9P2N6 904 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 UBQLN1Q9UMX0 589 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 RNF103-CHMP3A0A140T963 221 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 TCEA3O75764 348 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 SLC25A27O95847 323 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 DLDP09622 509 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 ZFXP17010 805 aaPredicted RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 EEF1B2P24534 225 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 DYNC1I2Q13409 638 aaKnown RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 DNAL1Q4LDG9 190 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 AGKQ53H12 422 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 FAM117BQ6P1L5 589 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 LCLAT1Q6UWP7 414 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 B3GALNT2Q8NCR0 500 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 ESAMQ96AP7 390 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 ILKAPQ9H0C8 392 aaPredicted RBP12.19□□□□□ -0.46
USP1-201ENST00000339950 EBF3Q9H4W6 596 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 USP29Q9HBJ7 922 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 ZBBXA8MT70 800 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 GIPC1O14908 333 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 GP5P40197 560 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 SERPINB9P50453 376 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 TNFAIP8L3Q5GJ75 292 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 SLC27A1Q6PCB7 646 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 FAXDC2Q96IV6 333 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 SENP8Q96LD8 212 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 OR52B2Q96RD2 323 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 NMRAL1Q9HBL8 299 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 ITGA11Q9UKX5 1188 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 PCDHGC3Q9UN70 934 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 DTNAQ9Y4J8 743 aa12.19□□□□□ -0.46
USP1-201ENST00000339950 NRP1O14786 923 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 AKAP10O43572 662 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 SIN3BO75182 1162 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 SPAG6O75602 509 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 ITGBL1O95965 494 aaPredicted RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 GFAPP14136 432 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 NMBRP28336 390 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 TKTP29401 623 aaKnown RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 L1CAMP32004 1257 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 TARBP2Q15633 366 aaKnown RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 FSCBQ5H9T9 825 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 SCAMP5Q8TAC9 235 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 MCRS1Q96EZ8 462 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 DNAJC1Q96KC8 554 aaKnown RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 ZNF560Q96MR9 790 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 PRPF18Q99633 342 aaKnown RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 SAR1AQ9NR31 198 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 ARHGEF38Q9NXL2 777 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 EVPLQ92817 2033 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 SAC3D1A6NKF1 404 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 SERPINE1P05121 402 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 PTPN1P18031 435 aaKnown RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 YWHAHQ04917 246 aaPredicted RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 PDAP1Q13442 181 aaKnown RBP12.18□□□□□ -0.46
USP1-201ENST00000339950 SNAPC2Q13487 334 aa12.18□□□□□ -0.46
USP1-201ENST00000339950 PRKD1Q15139 912 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms