RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NUF2Q9BZD4 464 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 NSUN3Q9H649 340 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 AGO1Q9UL18 857 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 MYBPHLA2RUH7 354 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 QSOX1O00391 747 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 GALTP07902 379 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 RARAP10276 462 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 PBX3P40426 434 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 PDGFRLQ15198 375 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 SCARA3Q6AZY7 606 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 RAET1GQ6H3X3 334 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 MFSD7Q6UXD7 560 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 OVCA2Q8WZ82 227 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 KREMEN1Q96MU8 473 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 NECTIN4Q96NY8 510 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 SERPINI1Q99574 410 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 ROPN1BQ9BZX4 212 aaPredicted RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 NRDE2Q9H7Z3 1164 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 ROPN1Q9HAT0 212 aaPredicted RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 GDAP2Q9NXN4 497 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 MSI1O43347 362 aaKnown RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 ADSSP30520 456 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SEC13P55735 322 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 GHRHRQ02643 423 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CCDC3Q9BQI4 270 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 RNF39Q9H2S5 420 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PCMTD2Q9NV79 361 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 RCOR3Q9P2K3 495 aaPredicted RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 G3BP2Q9UN86 482 aaKnown RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 ADAMTS3O15072 1205 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PMM2O15305 246 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 MGEA5O60502 916 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CCNB1P14635 433 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 MAPKAPK2P49137 400 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 ELP6Q0PNE2 266 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SOWAHAQ2M3V2 549 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SPDYE7PQ495Y7 208 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CCDC38Q502W7 563 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PRPF39Q86UA1 669 aaKnown RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 VCX3BQ9H321 246 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 COPS7BQ9H9Q2 264 aaPredicted RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 INSL5Q9Y5Q6 135 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 E9PAM4 449 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CACNB4O00305 520 aaPredicted RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 RGS20O76081 388 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 AGTP01019 485 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 RHOQP17081 205 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 BMPR1AP36894 532 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 GJA8P48165 433 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PSMD8P48556 350 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 POU4F1Q01851 419 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SLC20A2Q08357 652 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 LONRF1Q17RB8 773 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SPDYAQ5MJ70 313 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 ZNF438Q7Z4V0 828 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SPATA24Q86W54 205 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 DAW1Q8N136 415 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 FBXO36Q8NEA4 188 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 RNF217Q8TC41 542 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 MTBPQ96DY7 904 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CCDC126Q96EE4 140 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 B3GALT6Q96L58 329 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 APOL2Q9BQE5 337 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 IKZF4Q9H2S9 585 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 ERVW-1Q9UQF0 538 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CAPN6Q9Y6Q1 641 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 ARAP2Q8WZ64 1704 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 A0A1W2PRU2 124 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CDH16O75309 829 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 LMO2P25791 158 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 GDI1P31150 447 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 CD86P42081 329 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 SATB1Q01826 763 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 USP4Q13107 963 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 MAPRE2Q15555 327 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PKN3Q6P5Z2 889 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PITPNM3Q9BZ71 974 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 GRID1Q9ULK0 1009 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 STARD13Q9Y3M8 1113 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PCDHB9Q9Y5E1 797 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 ZFP37Q9Y6Q3 630 aaPredicted RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 DYRK3O43781 588 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 STMN1P16949 149 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 RABGGTBP53611 331 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 PTAR1Q7Z6K3 402 aaPredicted RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 PSTKQ8IV42 348 aaKnown RBP10.36□□□□□ -0.75
USP54-201ENST00000339859 C9orf72Q96LT7 481 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 FGD4Q96M96 766 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 ZIC5Q96T25 663 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 TMPRSS4Q9NRS4 437 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 TAS2R14Q9NYV8 317 aa10.36□□□□□ -0.75
USP54-201ENST00000339859 A0A1B0GVM2 712 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TCAF2A6NFQ2 919 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 LRRC72A6NJI9 287 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 IRAK2O43187 625 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 CLASP2O75122 1294 aaKnown RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 ZNF623O75123 536 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 SPAG7O75391 227 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 HAPLN1P10915 354 aaPredicted RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 CLCN6P51797 869 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms