RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CITED4Q96RK1 184 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 RTKNQ9BST9 563 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 ATP13A1Q9HD20 1204 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 LRRC4BQ9NT99 713 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 MALT1Q9UDY8 824 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 PPM1HQ9ULR3 514 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 ANGEL1Q9UNK9 670 aaKnown RBP4.24□□□□□ -1.73
NEDD4-201ENST00000338963 CPDO75976 1380 aa4.24□□□□□ -1.73
NEDD4-201ENST00000338963 A0A1W2PPW3 197 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 SNAP23O00161 211 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TSPAN4O14817 238 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 UGT2B4P06133 528 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 SAGP10523 405 aaPredicted RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 GZMAP12544 262 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 IL7P13232 177 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ENO3P13929 434 aaPredicted RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 COILP38432 576 aaPredicted RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 EIF2DP41214 584 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TPMTP51580 245 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PEX3P56589 373 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF45Q02386 682 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ORC2Q13416 577 aaPredicted RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ARSHQ5FYA8 562 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PIK3R6Q5UE93 754 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 MFSD6Q6ZSS7 791 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 BNIPLQ7Z465 357 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 POU5F2Q8N7G0 328 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 LRRC57Q8N9N7 239 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 EXOC2Q96KP1 924 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 MXD3Q9BW11 206 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 POLR1EQ9GZS1 481 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ADAMTS10Q9H324 1103 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 POLR1BQ9H9Y6 1135 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 NCOA5Q9HCD5 579 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 DNAJC11Q9NVH1 559 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TJP2Q9UDY2 1190 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TRAF6Q9Y4K3 522 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PCDHB5Q9Y5E4 795 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PEX16Q9Y5Y5 336 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PTPRUQ92729 1446 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 GLI2P10070 1586 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 FOXN1O15353 648 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 NIPSNAP2O75323 286 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 APOA4P06727 396 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 HPGDP15428 266 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 AOC1P19801 751 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ADD2P35612 726 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 UGT2B10P36537 528 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 NR4A2P43354 598 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 HLCSP50747 726 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 OR2B6P58173 313 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 RNASE9P60153 205 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 STX4Q12846 297 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 LAMC2Q13753 1193 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PERM1Q5SV97 790 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PXDC1Q5TGL8 231 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PPP1R2P3Q6NXS1 205 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 DCUN1D2Q6PH85 259 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 FRMD7Q6ZUT3 714 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ARCQ7LC44 396 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PRSS48Q7RTY5 328 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF786Q8N393 782 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 AHCYL2Q96HN2 611 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 WACQ9BTA9 647 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 IFT46Q9NQC8 304 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 NINJ2Q9NZG7 142 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 WARS2Q9UGM6 360 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 DCTN4Q9UJW0 460 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PCDHB13Q9Y5F0 798 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 CCDC182A6NF36 153 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 KIAA0355O15063 1070 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 HOXB6P17509 224 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 OSBPP22059 807 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 S100PP25815 95 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ADSSP30520 456 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 FOXN2P32314 431 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 HK3P52790 923 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 PPP5CP53041 499 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 OTUD4Q01804 1114 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 GALEQ14376 348 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ANKRD39Q53RE8 183 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TTC38Q5R3I4 469 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 IFIT1BQ5T764 474 aaKnown RBP4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ALKBH2Q6NS38 261 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TFAP2DQ7Z6R9 452 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 ANKLE2Q86XL3 938 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 RASGRP3Q8IV61 690 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 GANCQ8TET4 914 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 YIPF5Q969M3 257 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 TEKT5Q96M29 485 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 KLHL32Q96NJ5 620 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 MCMBPQ9BTE3 642 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 FBXO8Q9NRD0 319 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 SMOXQ9NWM0 555 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 GLTPQ9NZD2 209 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 SERPINB13Q9UIV8 391 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 GINS2Q9Y248 185 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 NDST3O95803 873 aa4.23□□□□□ -1.73
NEDD4-201ENST00000338963 IFNA7P01567 189 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms