RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 LPCAT2Q7L5N7 544 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 PARP8Q8N3A8 854 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ZBTB45Q96K62 511 aaPredicted RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 FRMD8P1Q9BZ68 369 aaPredicted RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 SLITRK2Q9H156 845 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 LRRC4BQ9NT99 713 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 PRKAB1Q9Y478 270 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 PSMD11O00231 422 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 TP73O15350 636 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 CYP2A6P11509 494 aaPredicted RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 ZNF37AP17032 561 aaPredicted RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 ADORA2AP29274 412 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 KRR1Q13601 381 aaKnown RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 TSNQ15631 228 aaKnown RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 KDM7AQ6ZMT4 941 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 DHFR2Q86XF0 187 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ZC3H7AQ8IWR0 971 aaKnown RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 CYP2W1Q8TAV3 490 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 FBXO30Q8TB52 745 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 GDPD5Q8WTR4 605 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 SUSD6Q92537 303 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 PROX1Q92786 737 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 GLIS2Q9BZE0 524 aaPredicted RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 GRIP2Q9C0E4 1043 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 TRIT1Q9H3H1 467 aaKnown RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 FBXO44Q9H4M3 255 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ADPRHL2Q9NX46 363 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 CROTQ9UKG9 612 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 BARX2Q9UMQ3 279 aaPredicted RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 NAALADL1Q9UQQ1 740 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 CENPXA8MT69 81 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ZBTB14O43829 449 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 UBOX5O94941 541 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 HK2P52789 917 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ZNF720Q7Z2F6 126 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 TRIM74Q86UV6 250 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 TRIM73Q86UV7 250 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 TXNRD3Q86VQ6 643 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 TMEM132CQ8N3T6 1108 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 EFCAB3Q8N7B9 438 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 RHOBTB2Q9BYZ6 727 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 IL25Q9H293 177 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 DDX18Q9NVP1 670 aaKnown RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 R3HDM2Q9Y2K5 976 aaKnown RBP12.84□□□□□ -0.35
SDC3-201ENST00000336798 SPATA31E1Q6ZUB1 1445 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ANKDD1BA6NHY2 528 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 PHGDHO43175 533 aaKnown RBP12.83□□□□□ -0.35
SDC3-201ENST00000336798 CDC25CP30307 473 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 RAD23AP54725 363 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 CDH17Q12864 832 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 KPNB1Q14974 876 aaKnown RBP12.83□□□□□ -0.35
SDC3-201ENST00000336798 GRTP1Q5TC63 336 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 RBM23Q86U06 439 aaKnown RBP12.83□□□□□ -0.35
SDC3-201ENST00000336798 FAM9CQ8IZT9 166 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 HTR3CQ8WXA8 447 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 RNF208Q9H0X6 261 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 TAS2R13Q9NYV9 303 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 INVSQ9Y283 1065 aa12.83□□□□□ -0.35
SDC3-201ENST00000336798 ATP6V1G2O95670 118 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 ADCYAP1R1P41586 468 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 TRIM28Q13263 835 aaKnown RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 DGCR6Q14129 220 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 PRAMEF19Q5SWL8 479 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 SV2AQ7L0J3 742 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 KYQ8NBH2 561 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 LEMD2Q8NC56 503 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 MYCBPAPQ8TBZ2 947 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 CXorf40AQ8TE69 158 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 KANSL1LA0AUZ9 987 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 HPCAL1P37235 193 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 PKNOX1P55347 436 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 EPS8Q12929 822 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 CDC73Q6P1J9 531 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 SLC41A1Q8IVJ1 513 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 TCP10LQ8TDR4 215 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 CLEC4MQ9H2X3 399 aaPredicted RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 POLE3Q9NRF9 147 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 MAT2BQ9NZL9 334 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 AKAP7Q9P0M2 348 aaPredicted RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 KLQ9UEF7 1012 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 ATXN2Q99700 1313 aaKnown RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 MAGI3Q5TCQ9 1506 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 IDH3BO43837 385 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 HIST1H2ABP04908 130 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 TSPAN8P19075 237 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 SREBF1P36956 1147 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 ADARP55265 1226 aaKnown RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 IL2P60568 153 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.83□□□□□ -0.36
SDC3-201ENST00000336798 NFE2Q16621 373 aaPredicted RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 GPAT3Q53EU6 434 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 SNX30Q5VWJ9 437 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 ARMC3Q5W041 872 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 HIST3H2AQ7L7L0 130 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 OR56A4Q8NGH8 313 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 HIST1H2ACQ93077 130 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 UBA2Q9UBT2 640 aaPredicted RBP12.83□□□□□ -0.36
SDC3-201ENST00000336798 A0A096LPK6 155 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 IL6P05231 212 aa12.83□□□□□ -0.36
SDC3-201ENST00000336798 ZNF24P17028 368 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms