RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PLA2G4CQ9UP65 541 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 STON1Q9Y6Q2 735 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 WASH3PC4AMC7 463 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 NPC1O15118 1278 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 MTA2O94776 668 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 DLDP09622 509 aaKnown RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 TDGF1P13385 188 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 RHOQP17081 205 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 EPHB2P29323 1055 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 GJC1P36383 396 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 IL12RB1P42701 662 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 CTSOP43234 321 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 TPI1P60174 286 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 SLC25A11Q02978 314 aaKnown RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 CRY1Q16526 586 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 PPP6R3Q5H9R7 873 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 TXNRD3NBQ6F5E7 133 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 TMEM92Q6UXU6 159 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 SETD3Q86TU7 594 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 PSTKQ8IV42 348 aaKnown RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 TSTD1Q8NFU3 115 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 HSPH1Q92598 858 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 PPP1R9BQ96SB3 815 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 FEM1AQ9BSK4 669 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 ZNF212Q9UDV6 495 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 VPS28Q9UK41 221 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 REXO2Q9Y3B8 237 aaKnown RBP16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 RAD54BQ9Y620 910 aa16.33■□□□□ 0.2
CCDC28A-201ENST00000332797 MUC22E2RYF6 1773 aaPredicted RBP16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 DOCK4Q8N1I0 1966 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 CACNA1IQ9P0X4 2223 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 EEF2KO00418 725 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 ASLP04424 464 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 RARAP10276 462 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 MAN1A1P33908 653 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 NOP2P46087 812 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 PXNP49023 591 aaPredicted RBP16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 MRE11P49959 708 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 DGKEP52429 567 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 TCEAL1Q15170 157 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 HADHQ16836 314 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 PTPRNQ16849 979 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 ZNF528Q3MIS6 628 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 BOLA3Q53S33 107 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 HEATR6Q6AI08 1181 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 SERPINA13PQ6UXR4 307 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 NLRP14Q86W24 1093 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 GABRG3Q99928 467 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 TMEM248Q9NWD8 314 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 DNAI1Q9UI46 699 aa16.32■□□□□ 0.2
CCDC28A-201ENST00000332797 TCRBV21S2A2A0A5A6 115 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ILVBLA1L0T0 632 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 APBB3O95704 486 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 HLA-EP13747 358 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 PRKCHP24723 683 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 HTR7P34969 479 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ARHGAP25P42331 645 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 MAPKAPK2P49137 400 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 PLK1P53350 603 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ST8SIA6P61647 398 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ECT2LQ008S8 904 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 DMWDQ09019 674 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 KIAA1328Q86T90 577 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 CAMKK1Q8N5S9 505 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ZNF366Q8N895 744 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 TEKT4Q8WW24 435 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ATOH1Q92858 354 aaPredicted RBP16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ALG14Q96F25 216 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 DESI2Q9BSY9 194 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 RETREG1Q9H6L5 497 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 CATSPERBQ9H7T0 1116 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 POLMQ9NP87 494 aaPredicted RBP16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 NDFIP2Q9NV92 336 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 ERVW-1Q9UQF0 538 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 OR51B4Q9Y5P0 310 aa16.31■□□□□ 0.2
CCDC28A-201ENST00000332797 A0A0D9SEW6 157 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 A0A1W2PQF6 199 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 RCCD1A6NED2 376 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 FGF10O15520 208 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 DAPK3O43293 454 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 ALDH1A2O94788 518 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 EPHX1P07099 455 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 GOT1P17174 413 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 FNTBP49356 437 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 STK19P49842 368 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 VAV2P52735 878 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 NRLP54845 237 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 TAS2R40P59535 323 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 KRT83P78385 493 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 SULT2A1Q06520 285 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 ENPP2Q13822 863 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 STARD3Q14849 445 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 DPYSL2Q16555 572 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 ANO7Q6IWH7 933 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 KIAA1211LQ6NV74 962 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 ZNF783Q6ZMS7 281 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 RFX8Q6ZV50 586 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 RTL3Q8N8U3 475 aaKnown RBP16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 OR7D4Q8NG98 312 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms