RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 EBNA1BP2Q99848 306 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 MUC3BQ9H195 1237 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 CLK4Q9HAZ1 481 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 AGO2Q9UKV8 859 aaKnown RBP13.78□□□□□ -0.2
SKA3-201ENST00000298260 FIS1Q9Y3D6 152 aa13.78□□□□□ -0.2
SKA3-201ENST00000298260 BCAS2O75934 225 aaPredicted RBP13.77□□□□□ -0.2
SKA3-201ENST00000298260 ERBB2P04626 1255 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 EDN1P05305 212 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 PPARGP37231 505 aaPredicted RBP13.77□□□□□ -0.2
SKA3-201ENST00000298260 TNFSF9P41273 254 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 GRIA3P42263 894 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 CREB5Q02930 508 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 CARTPTQ16568 116 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 TKFCQ3LXA3 575 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 PERM1Q5SV97 790 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 TREML2Q5T2D2 321 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 METTL21CQ5VZV1 264 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 CATSPER1Q8NEC5 780 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 C17orf50Q8WW18 174 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 BORCS5Q969J3 196 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 SLCO4A1Q96BD0 722 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 ZNF597Q96LX8 424 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 CISHQ9NSE2 258 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 ST14Q9Y5Y6 855 aa13.77□□□□□ -0.2
SKA3-201ENST00000298260 RGSL1A5PLK6 1076 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 SAT1P21673 171 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 MTMR1Q13613 665 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 TTC33Q6PID6 262 aaPredicted RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 GK5Q6ZS86 529 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 TMEM179Q6ZVK1 233 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 CCDC80Q76M96 950 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 LDHDQ86WU2 507 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 THNSL1Q8IYQ7 743 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 ACVR1CQ8NER5 493 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 RPL10LQ96L21 214 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 SLC39A3Q9BRY0 314 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 TARS2Q9BW92 718 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 SIAEQ9HAT2 523 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 PNPLA3Q9NST1 481 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 DUS2Q9NX74 493 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 MKS1Q9NXB0 559 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 ARHGAP28Q9P2N2 729 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 PADI4Q9UM07 663 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 KCNU1A8MYU2 1149 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 LDHAP00338 332 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 ATP5BP06576 529 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 TFE3P19532 575 aaPredicted RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 GLDCP23378 1020 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 CA8P35219 290 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 CDH8P55286 799 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 ZNF829Q3KNS6 432 aaPredicted RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 ZFP1Q6P2D0 407 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 C16orf89Q6UX73 402 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 HERC6Q8IVU3 1022 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 FBXL20Q96IG2 436 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 OSBPL11Q9BXB4 747 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 MTMR12Q9C0I1 747 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 SDCBP2Q9H190 292 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 AGO4Q9HCK5 861 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 PCDH12Q9NPG4 1184 aa13.77□□□□□ -0.21
SKA3-201ENST00000298260 NXF1Q9UBU9 619 aaKnown RBP13.77□□□□□ -0.21
SKA3-201ENST00000298260 TRDMT1O14717 391 aaKnown RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 B4GAT1O43505 415 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 EXTL3O43909 919 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 GLRA3O75311 464 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 TRUB2O95900 331 aaKnown RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 CRKP46108 304 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 HARS2P49590 506 aaKnown RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 PTK2BQ14289 1009 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 RAB39AQ14964 217 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 CA9Q16790 459 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 GALNT18Q6P9A2 607 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 ZBTB49Q6ZSB9 765 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 PLD5Q8N7P1 536 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 Q8N9G6 341 aaPredicted RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 GMCL1P1Q8NEA9 526 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 TMEM143Q96AN5 459 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 HERC2P3Q9BVR0 1158 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 GLIS2Q9BZE0 524 aaPredicted RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 HIPK3Q9H422 1215 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 DHX33Q9H6R0 707 aaKnown RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 POLR1BQ9H9Y6 1135 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 PI4KBQ9UBF8 816 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 TNS1Q9HBL0 1735 aaKnown RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 ZNF839A8K0R7 811 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 E7ENX8 843 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 G3V3G9 751 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 HSPA13P48723 471 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 ESRRGP62508 458 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 STILQ15468 1287 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 DCAF8Q5TAQ9 597 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 ANKRD26P1Q6NSI1 321 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 TRNP1Q6NT89 227 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 C14orf80Q86SX3 495 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 SMOXQ9NWM0 555 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 NCKIPSDQ9NZQ3 722 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 PAK5Q9P286 719 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 PRPF19Q9UMS4 504 aaKnown RBP13.76□□□□□ -0.21
SKA3-201ENST00000298260 MFHAS1Q9Y4C4 1052 aa13.76□□□□□ -0.21
SKA3-201ENST00000298260 GPC6Q9Y625 555 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms