RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MT-CO1P00395 513 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 LTFP02788 710 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CD1EP15812 388 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 EDNRBP24530 442 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CNTFP26441 200 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 BCAT1P54687 386 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 NAGLUP54802 743 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 PDK1Q15118 436 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 DPYSL2Q16555 572 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 TMEM198Q66K66 360 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 RWDD4Q6NW29 188 aaKnown RBP12.93□□□□□ -0.34
LIG1-201ENST00000263274 DCPSQ96C86 337 aaKnown RBP12.93□□□□□ -0.34
LIG1-201ENST00000263274 CNBD2Q96M20 576 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 FCRL3Q96P31 734 aaPredicted RBP12.93□□□□□ -0.34
LIG1-201ENST00000263274 OMDQ99983 421 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 ZNF408Q9H9D4 720 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CHRAC1Q9NRG0 131 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 APPL1Q9UKG1 709 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 PIN4Q9Y237 131 aaKnown RBP12.93□□□□□ -0.34
LIG1-201ENST00000263274 RECQL4O94761 1208 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 SRGAP2BP0DMP2 458 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 AOC1P19801 751 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 TPP2P29144 1249 aaPredicted RBP12.93□□□□□ -0.34
LIG1-201ENST00000263274 ARRB2P32121 409 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 POU5F1BQ06416 359 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 KLF10Q13118 480 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CNGA3Q16281 694 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 FSTL4Q6MZW2 842 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 ATG14Q6ZNE5 492 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 ARMCX2Q7L311 632 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 MAVSQ7Z434 540 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 FAM156AQ8NDB6 213 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 EDEM1Q92611 657 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 APBA2Q99767 749 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 UBE2OQ9C0C9 1292 aaKnown RBP12.93□□□□□ -0.34
LIG1-201ENST00000263274 MTMR10Q9NXD2 777 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 DTNAQ9Y4J8 743 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CDY2AQ9Y6F7 541 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 CDY1Q9Y6F8 540 aa12.93□□□□□ -0.34
LIG1-201ENST00000263274 TK2O00142 265 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 JCHAINP01591 159 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 C2P06681 752 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ITGAXP20702 1163 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 CPOXP36551 454 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 MAP3K7CLP57077 242 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 TPI1P60174 286 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 INCA1Q0VD86 236 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ZNF484Q5JVG2 852 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 SYPL2Q5VXT5 272 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 LRRC8BQ6P9F7 803 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.92□□□□□ -0.34
LIG1-201ENST00000263274 TTC16Q8NEE8 873 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 APPL2Q8NEU8 664 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 MAPK15Q8TD08 544 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 COPS7BQ9H9Q2 264 aaPredicted RBP12.92□□□□□ -0.34
LIG1-201ENST00000263274 ADA2Q9NZK5 511 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 NME7Q9Y5B8 376 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 KPNA7A9QM74 516 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ZBTB14O43829 449 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 VCLP18206 1134 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 MPP3Q13368 585 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 CCNIQ14094 377 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 FLOT2Q14254 428 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 FBXO47Q5MNV8 452 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 C4orf22Q6V702 233 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ZSCAN18Q8TBC5 510 aaPredicted RBP12.92□□□□□ -0.34
LIG1-201ENST00000263274 RTP4Q96DX8 246 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ILKAPQ9H0C8 392 aaPredicted RBP12.92□□□□□ -0.34
LIG1-201ENST00000263274 ATXN3LQ9H3M9 355 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 NMRAL1Q9HBL8 299 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 RHBDL2Q9NX52 303 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 GTSE1Q9NYZ3 720 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 RUVBL2Q9Y230 463 aaKnown RBP12.92□□□□□ -0.34
LIG1-201ENST00000263274 STX16-NPEPL1H3BU86 382 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 TRIM13O60858 407 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 PIGNO95427 931 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ZNF460Q14592 562 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 DBN1Q16643 649 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 LAYNQ6UX15 382 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 NAPRTQ6XQN6 538 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 MARK2Q7KZI7 788 aaKnown RBP12.92□□□□□ -0.34
LIG1-201ENST00000263274 TTC39CQ8N584 583 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ANKRD52Q8NB46 1076 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 URGCPQ8TCY9 931 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ARNTL2Q8WYA1 636 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 NR1H4Q96RI1 486 aaPredicted RBP12.92□□□□□ -0.34
LIG1-201ENST00000263274 KCNK16Q96T55 309 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 SORT1Q99523 831 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 LRRC40Q9H9A6 602 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 CDHR5Q9HBB8 845 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 RBPJLQ9UBG7 517 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 MORF4L1Q9UBU8 362 aa12.92□□□□□ -0.34
LIG1-201ENST00000263274 ARID2Q68CP9 1835 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 MYOCOSA0A1B0GUC4 107 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 DDNO94850 711 aaPredicted RBP12.91□□□□□ -0.34
LIG1-201ENST00000263274 OR6B1O95007 311 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 NCAM1P13591 858 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 ERCC2P18074 760 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 SLC26A2P50443 739 aa12.91□□□□□ -0.34
LIG1-201ENST00000263274 SEPT6Q14141 434 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms