RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 F8W8V4 182 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 EEF2KO00418 725 aaKnown RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 COX4I1P13073 169 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 PGAM1P18669 254 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 TPSB2P20231 275 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 HOXA11P31270 313 aaPredicted RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 NAGLUP54802 743 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 SOX4Q06945 474 aaPredicted RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 BST2Q10589 180 aaKnown RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 TPSAB1Q15661 275 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 GRIK4Q16099 956 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 PAN2Q504Q3 1202 aaKnown RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 ARMC3Q5W041 872 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 ARCQ7LC44 396 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 OTOP3Q7RTS5 596 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 TMA16Q96EY4 203 aaKnown RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 CDRT15Q96T59 188 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 SH3GL3Q99963 347 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 SIK2Q9H0K1 926 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 SUDS3Q9H7L9 328 aaPredicted RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 DCDC2Q9UHG0 476 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 PARP14Q460N5 1801 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 I6L893 689 aaPredicted RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 NRP1O14786 923 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 TRPA1O75762 1119 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 C2P06681 752 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 SOX11P35716 441 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 GRIA2P42262 883 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 INHBEP58166 350 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 DEUP1Q05D60 604 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 CTBP1Q13363 440 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 MED21Q13503 144 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 CNPY1Q3B7I2 92 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 C9orf57Q5W0N0 161 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 CWF19L1Q69YN2 538 aaKnown RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 LRRC8BQ6P9F7 803 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 FBXL19Q6PCT2 694 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 IYDQ6PHW0 289 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 SPATA22Q8NHS9 363 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 KBTBD7Q8WVZ9 684 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 ZFP42Q96MM3 310 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 COPS7BQ9H9Q2 264 aaPredicted RBP9.33□□□□□ -0.92
MSH4-201ENST00000263187 VANGL2Q9ULK5 521 aa9.33□□□□□ -0.92
MSH4-201ENST00000263187 KPNA7A9QM74 516 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 DPYSL4O14531 572 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 AHCYL1O43865 530 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 PEX1O43933 1283 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 KLHL2O95198 593 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 JCHAINP01591 159 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ERCC2P18074 760 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 VCLP18206 1134 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MX2P20592 715 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NMBRP28336 390 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 GP5P40197 560 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 KLF10Q13118 480 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 POU6F1Q14863 301 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SH3D19Q5HYK7 790 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 FBXO47Q5MNV8 452 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NPWQ8N729 165 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ANKRD52Q8NB46 1076 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 DNAJC1Q96KC8 554 aaKnown RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 CNBD2Q96M20 576 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MPHOSPH6Q99547 160 aaKnown RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 GATA5Q9BWX5 397 aaPredicted RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 FRMD8Q9BZ67 464 aaPredicted RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 KLHL4Q9C0H6 718 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 LRRC4Q9HBW1 653 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 FZD10Q9ULW2 581 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 PTPRFP10586 1907 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SCN4AP35499 1836 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 hCG_2014768A0A024R1R8 64 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NEMP2A6NFY4 417 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MEIS3P2A8K0S8 358 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ZNF195O14628 629 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 USP17L7P0C7H9 530 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 TSPAN8P19075 237 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 HDCP19113 662 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 AFF1P51825 1210 aaKnown RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 PLK1P53350 603 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MARCH8Q5T0T0 291 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 RWDD4Q6NW29 188 aaKnown RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 LAYNQ6UX15 382 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MARK2Q7KZI7 788 aaKnown RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 SLC26A9Q7LBE3 791 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 OSTM1Q86WC4 334 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SIX6OS1Q8N1H7 587 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 BEST2Q8NFU1 509 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 KCTD4Q8WVF5 259 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 RCN3Q96D15 328 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 IFT43Q96FT9 208 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SEMA6AQ9H2E6 1030 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 OCEL1Q9H607 264 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 CYP4F12Q9HCS2 524 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NUDT5Q9UKK9 219 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ANK1P16157 1881 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 DOCK1Q14185 1865 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SNUPNO95149 360 aaKnown RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 MT-CYBP00156 380 aaPredicted RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 NCAM1P13591 858 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ZFXP17010 805 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms