RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 LRRN4Q8WUT4 740 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 PAFAH2Q99487 392 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 CIPCQ9C0C6 399 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 UBE2OQ9C0C9 1292 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 LMCD1Q9NZU5 365 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 TMEM120BA0PK00 339 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 FANCGO15287 622 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 NDUFS3O75489 264 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 ITGB1P05556 798 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 MGAT1P26572 445 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 PTGIRP43119 386 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 MGAT5Q09328 741 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 TPGS1Q6ZTW0 290 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 SLC26A11Q86WA9 606 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 PIK3R5Q8WYR1 880 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 HAPLN3Q96S86 360 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 C2orf81A6NN90 581 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 E5RI56 91 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 ACSL4O60488 711 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 USP12O75317 370 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 BEST1O76090 585 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 FGF18O76093 207 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 CORO1AP31146 461 aaKnown RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 FAM47EQ6ZV65 393 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 RBM23Q86U06 439 aaKnown RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 MCUQ8NE86 351 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 TSPAN17Q96FV3 270 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 QKIQ96PU8 341 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 KLF6Q99612 283 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 ADGRE3Q9BY15 652 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 PFDN4Q9NQP4 134 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 WBP1LQ9NX94 342 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 PKP3Q9Y446 797 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 MYO9BQ13459 2157 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 CLDN11O75508 207 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 CHN1P15882 459 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 TACR2P21452 398 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 YBEYP58557 167 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF844Q08AG5 666 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 ARHGEF7Q14155 803 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 MROH9Q5TGP6 573 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 DNAJB7Q7Z6W7 309 aaPredicted RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 NUDCD3Q8IVD9 361 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 MICALL1Q8N3F8 863 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 SLC35B2Q8TB61 432 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 DIS3LQ8TF46 1054 aaKnown RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 THG1LQ9NWX6 298 aaKnown RBP11.85□□□□□ -0.51
VPS4A-201ENST00000254950 NENFQ9UMX5 172 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 TLR6Q9Y2C9 796 aa11.85□□□□□ -0.51
VPS4A-201ENST00000254950 TBL1XO60907 577 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TPH1P17752 444 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 GPR15P49685 360 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 AUHQ13825 339 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 POU6F1Q14863 301 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 ARCQ7LC44 396 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 RAD9AQ99638 391 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CXCL16Q9H2A7 254 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 SMOC2Q9H3U7 446 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 SARS2Q9NP81 518 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF510Q9Y2H8 683 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TRDMT1O14717 391 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 WEE1P30291 646 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 GJA8P48165 433 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 GPR158Q5T848 1215 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 RNF19BQ6ZMZ0 732 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF598Q86UK7 904 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CRLF3Q8IUI8 442 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TDRD5Q8NAT2 981 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CASP10Q92851 521 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 BADQ92934 168 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TGS1Q96RS0 853 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 ELAC2Q9BQ52 826 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 PRKD2Q9BZL6 878 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 OSBPL2Q9H1P3 480 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 PCMTD2Q9NV79 361 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 PIH1D1Q9NWS0 290 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF446Q9NWS9 450 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 DTLQ9NZJ0 730 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 ANGPTL3Q9Y5C1 460 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 SNX10Q9Y5X0 201 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CCL16O15467 120 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CXCR3P49682 368 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 GSCP56915 257 aaPredicted RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 KCTD19Q17RG1 926 aaPredicted RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TMCO4Q5TGY1 634 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 MRNIPQ6NTE8 343 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 EXT2Q93063 718 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CHMP6Q96FZ7 201 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 XPO6Q96QU8 1125 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TBL1YQ9BQ87 522 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 BRCA1P38398 1863 aaKnown RBP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 H3BQF6 201 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TBC1D4O60343 1298 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 CRTAMO95727 393 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 PGAM1P18669 254 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 AARSP49588 968 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS4A-201ENST00000254950 TEX44Q53QW1 395 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 RTP2Q5QGT7 225 aa11.84□□□□□ -0.51
VPS4A-201ENST00000254950 PPP1R15BQ5SWA1 713 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms