RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 TUBGCP5Q96RT8 1024 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CASS4Q9NQ75 786 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 UTP6Q9NYH9 597 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 COQ4Q9Y3A0 265 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 LINC00854A0A1B0GVQ3 168 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CAPN8A6NHC0 703 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 UBDO15205 165 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PTPN1P18031 435 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CRABP2P29373 138 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 RPL14P50914 215 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CA9Q16790 459 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CALML6Q8TD86 181 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 KCTD15Q96SI1 283 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 MID1IP1Q9NPA3 183 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 BUD23O43709 281 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 XPAP23025 273 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CCDC153Q494R4 210 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ZRANB3Q5FWF4 1079 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 DHDDSQ86SQ9 333 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CERS2Q96G23 380 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SENP8Q96LD8 212 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 DDX43Q9NXZ2 648 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TELO2Q9Y4R8 837 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 FAM186AA6NE01 2351 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 C9JVG2 144 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PARNO95453 639 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CD151P48509 253 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 GRIK4Q16099 956 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TBCELQ5QJ74 424 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 WSCD1Q658N2 575 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TMEM192Q8IY95 271 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 JADE3Q92613 823 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 GATA5Q9BWX5 397 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ROGDIQ9GZN7 287 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SDCBP2Q9H190 292 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 KIF17Q9P2E2 1029 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CASTOR2A6NHX0 329 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ENDOD1O94919 500 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SERPINA6P08185 405 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 KLRC2P26717 231 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 GEMP55040 296 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PPP1R26Q5T8A7 1209 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 MIB1Q86YT6 1006 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 WDR60Q8WVS4 1066 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 LENG8Q96PV6 779 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PPP1R10Q96QC0 940 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 THUMPD3Q9BV44 507 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TXLNGYQ9BZA5 131 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TRHDEQ9UKU6 1024 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 RNF112Q9ULX5 631 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 RPL26L1Q9UNX3 145 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CRYL1Q9Y2S2 319 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 AAR2Q9Y312 384 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ERO1BQ86YB8 467 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CD101Q93033 1021 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 UBE2OQ9C0C9 1292 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CROTQ9UKG9 612 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ZMYND8Q9ULU4 1186 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 C15orf38-AP3S2A0A0A6YYH1 394 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 M0R3G1 203 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PSMD12O00232 456 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 MGEA5O60502 916 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PEX2P28328 305 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 NPY2RP49146 381 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CDK7P50613 346 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 NEK3P51956 506 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 C16orf72Q14CZ0 275 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 R3HDM1Q15032 1099 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 FBXO47Q5MNV8 452 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CELF3Q5SZQ8 465 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PACS1Q6VY07 963 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 DNAJC14Q6Y2X3 702 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CCDC81Q6ZN84 652 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ARPINQ7Z6K5 226 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SEPT5Q99719 369 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ETAA1Q9NY74 926 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TTC3P53804 2025 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 LIN7AO14910 233 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 NFKB1P19838 968 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 OR1G1P47890 313 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CTBP1Q13363 440 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CERCAMQ5T4B2 595 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TMEM130Q8N3G9 435 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 NR1H4Q96RI1 486 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 MRPL45Q9BRJ2 306 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 LHX5Q9H2C1 402 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ZNF358Q9NW07 568 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SYNPO2Q9UMS6 1093 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PMM2O15305 246 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 HSPA1AP0DMV8 641 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 HSPA1BP0DMV9 641 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 HNRNPLP14866 589 aaKnown RBP eCLIP4.7□□□□□ -1.662e-8■■■■■ 55.6
VPS13C-201ENST00000249837 SLC26A2P50443 739 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 TUBP50607 506 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ATXN1P54253 815 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 DAB2P98082 770 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 POU4F1Q01851 419 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 C6orf52Q5T4I8 152 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 CWF19L1Q69YN2 538 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ANO7Q6IWH7 933 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms