RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TRAPPC9Q96Q05 1148 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 CDH19Q9H159 772 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 VCX3BQ9H321 246 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 COG4Q9H9E3 785 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 PIGVQ9NUD9 493 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 PIN4Q9Y237 131 aaKnown RBP19.14■□□□□ 0.66
CPSF3-201ENST00000238112 A0A096LPK6 155 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 CLDN5O00501 218 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 DCXO43602 365 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 DARSP14868 501 aaKnown RBP19.14■□□□□ 0.65
CPSF3-201ENST00000238112 NDUFV1P49821 464 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 USP4Q13107 963 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 PCBP1Q15365 356 aaKnown RBP eCLIP19.14■□□□□ 0.65
CPSF3-201ENST00000238112 SYPL2Q5VXT5 272 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 BNIPLQ7Z465 357 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 DEFB107AQ8IZN7 70 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 PPP2R3CQ969Q6 453 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 IFT43Q96FT9 208 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 AGAP2Q99490 1192 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 KATNBL1Q9H079 304 aa19.14■□□□□ 0.65
CPSF3-201ENST00000238112 BUD23O43709 281 aaKnown RBP19.13■□□□□ 0.65
CPSF3-201ENST00000238112 LYNP07948 512 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 SMPD1P17405 629 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 ERCC2P18074 760 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 PGM2L1Q6PCE3 622 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 SLC30A9Q6PML9 568 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 TMEM135Q86UB9 458 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 PHTF2Q8N3S3 785 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 ZNF781Q8N8C0 355 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 NLGN2Q8NFZ4 835 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 OR6Y1Q8NGX8 325 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 SLC7A14Q8TBB6 771 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 AZIN2Q96A70 460 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 MED10Q9BTT4 135 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 ARHGAP26Q9UNA1 814 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 TMEM114B3SHH9 223 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 BEST1O76090 585 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 SNAI1O95863 264 aaPredicted RBP19.13■□□□□ 0.65
CPSF3-201ENST00000238112 GNAT1P11488 350 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 ITGAXP20702 1163 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 CALRP27797 417 aaKnown RBP19.13■□□□□ 0.65
CPSF3-201ENST00000238112 PRDX6P30041 224 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 TPI1P60174 286 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 BTKQ06187 659 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 CCNIQ14094 377 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 ANKRD20A4Q4UJ75 823 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 HSP90AA5PQ58FG0 334 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 EPGNQ6UW88 154 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 FRMD7Q6ZUT3 714 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 OSTM1Q86WC4 334 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 GBP5Q96PP8 586 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 SLC2A13Q96QE2 648 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 OXCT2Q9BYC2 517 aaPredicted RBP19.13■□□□□ 0.65
CPSF3-201ENST00000238112 CAB39LQ9H9S4 337 aa19.13■□□□□ 0.65
CPSF3-201ENST00000238112 E9PBE3 544 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 KLHL41O60662 606 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 ZCCHC18P0CG32 403 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 COX4I1P13073 169 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 WARSP23381 471 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 ACAT1P24752 427 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 ADRA1BP35368 520 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 TBL3Q12788 808 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 SNAPC2Q13487 334 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 DUSP28Q4G0W2 176 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 THEMIS2Q5TEJ8 643 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 LIMS2Q7Z4I7 341 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 PHC3Q8NDX5 983 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 GTF3C2Q8WUA4 911 aaPredicted RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 KCTD13Q8WZ19 329 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 GORASP1Q9BQQ3 440 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 CASS4Q9NQ75 786 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 MAN1C1Q9NR34 630 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 PAPOLBQ9NRJ5 636 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 MAGED2Q9UNF1 606 aaPredicted RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 RAD54BQ9Y620 910 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 ZCWPW2A0A1B0GU75 182 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 G3V2L1 256 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 FAM72CH0Y354 149 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 NCAM2O15394 837 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 TIMM44O43615 452 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 ATP9BO43861 1147 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 H2AFYO75367 372 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 F7P08709 466 aaPredicted RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 HOXD8P13378 290 aaPredicted RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 AXLP30530 894 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 SERPINB6P35237 376 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 TKTL1P51854 596 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 IRF9Q00978 393 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 SOX4Q06945 474 aaPredicted RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 PEX6Q13608 980 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 FRG1Q14331 258 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 FAM72AQ5TYM5 149 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 FAM72DQ6L9T8 149 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 NAPRTQ6XQN6 538 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 HFE2Q6ZVN8 426 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 FAM72BQ86X60 149 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 TOP6BLQ8N6T0 577 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 TDRD5Q8NAT2 981 aaKnown RBP19.12■□□□□ 0.65
CPSF3-201ENST00000238112 URGCPQ8TCY9 931 aa19.12■□□□□ 0.65
CPSF3-201ENST00000238112 SLC9A7Q96T83 725 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms