RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PET100P0DJ07 73 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 OTOAQ7RTW8 1153 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 FAM126BQ8IXS8 530 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 RNASE11Q8TAA1 199 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 CRAMP1Q96RY5 1269 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PLGRKTQ9HBL7 147 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ZDHHC4Q9NPG8 344 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 IL1RAPQ9NPH3 570 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ETAA1Q9NY74 926 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MORF4L1Q9UBU8 362 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ALG6Q9Y672 507 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TCP10L2B9ZVM9 353 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 A1BGP04217 495 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 OR56A5P0C7T3 313 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MCAMP43121 646 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 EPHX4Q8IUS5 362 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 WDR49Q8IV35 697 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TMEM86AQ8N2M4 240 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 NKAPQ8N5F7 415 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 RNF25Q96BH1 459 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MRPL57Q9BQC6 102 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF408Q9H9D4 720 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 FAM217BQ9NTX9 383 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 IFT80Q9P2H3 777 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MEMO1Q9Y316 297 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ZNFX1Q9P2E3 1918 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MYO7BQ6PIF6 2116 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PLA2G6O60733 806 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SRPRAP08240 638 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MYL9P24844 172 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 RPL26P61254 145 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 AAGABQ6PD74 315 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PLCZ1Q86YW0 608 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 RASGEF1AQ8N9B8 481 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SETD4Q9NVD3 440 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 GDAQ9Y2T3 454 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ARFGEF2Q9Y6D5 1785 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SPATA31D1Q6ZQQ2 1576 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SEC24DO94855 1032 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 GSTM1P09488 218 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PCNAP12004 261 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PITPNAQ00169 270 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ACOX1Q15067 660 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 LONRF1Q17RB8 773 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 KIZQ2M2Z5 673 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TBC1D10BQ4KMP7 808 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 GPR158Q5T848 1215 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 IL31Q6EBC2 164 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF549Q6P9A3 640 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 GET4Q7L5D6 327 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SAMD14Q8IZD0 417 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 LINC00471Q8N535 108 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 STAG3L4Q8TBR4 150 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 BORCS5Q969J3 196 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SPON2Q9BUD6 331 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TRIM39Q9HCM9 518 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 METTL5Q9NRN9 209 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 RNF146Q9NTX7 359 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MEGF6O75095 1541 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 G3V2T6 193 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 AXIN1O15169 862 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MTA2O94776 668 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 EIF2AK2P19525 551 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 CCR1P32246 355 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ITGA8P53708 1063 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ATF7IP2Q5U623 682 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 C16orf86Q6ZW13 317 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 POLNQ7Z5Q5 900 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 DHRSXQ8N5I4 330 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TMEM169Q96HH4 297 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 NYAP2Q9P242 653 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MRPS33Q9Y291 106 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PCDHGB1Q9Y5G3 927 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PGRMC2O15173 223 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TULP3O75386 442 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 GSTT2BP0CG30 244 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 NR2F6P10588 404 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SLC2A4P14672 509 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SDC2P34741 201 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ERICH5Q6P6B1 374 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 HM13Q8TCT9 377 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 FAM120BQ96EK7 910 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MKLN1Q9UL63 735 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 C15orf41Q9Y2V0 281 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SNX13Q9Y5W8 968 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 PTPRUQ92729 1446 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 CHRM3P20309 590 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 NAIF1Q69YI7 327 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 USP45Q70EL2 814 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 SNX32Q86XE0 403 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 AKAP1Q92667 903 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 TEKT5Q96M29 485 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ELOVL4Q9GZR5 314 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ASB7Q9H672 318 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 CLK4Q9HAZ1 481 aaKnown RBP6.18□□□□□ -1.42
VPS13D-201ENST00000011700 MKS1Q9NXB0 559 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 FETUBQ9UGM5 382 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 GNPTGQ9UJJ9 305 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 RAB26Q9ULW5 256 aa6.18□□□□□ -1.42
VPS13D-201ENST00000011700 ANGPT4Q9Y264 503 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms