RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 DIAPH1O60610 1272 aaKnown RBP6.92□□□□□ -1.3
SCN3A-210ENST00000640652 CD109Q6YHK3 1445 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 REREQ9P2R6 1566 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 MSNP26038 577 aaKnown RBP6.92□□□□□ -1.3
SCN3A-210ENST00000640652 SLC4A3P48751 1232 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 UGGT1Q9NYU2 1555 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 MYH6P13533 1939 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 SYAP1Q96A49 352 aaPredicted RBP6.92□□□□□ -1.3
SCN3A-210ENST00000640652 CHMP5Q9NZZ3 219 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 LMTK2Q8IWU2 1503 aa6.92□□□□□ -1.3
SCN3A-210ENST00000640652 SPRYD3Q8NCJ5 442 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 CHMP4AQ9BY43 222 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 RICTORQ6R327 1708 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 RIPK4P57078 832 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 POGZQ7Z3K3 1410 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 RARSP54136 660 aaKnown RBP6.91□□□□□ -1.3
SCN3A-210ENST00000640652 PUS7Q96PZ0 661 aaKnown RBP6.91□□□□□ -1.3
SCN3A-210ENST00000640652 IL16Q14005 1332 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 PHF14O94880 888 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 REC8O95072 547 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 GNAI1P63096 354 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 ATF7IPQ6VMQ6 1270 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 FAM43AQ8N2R8 423 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 ABCC3O15438 1527 aa6.91□□□□□ -1.3
SCN3A-210ENST00000640652 FRAT2O75474 233 aaPredicted RBP6.9□□□□□ -1.3
SCN3A-210ENST00000640652 GZF1Q9H116 711 aaPredicted RBP6.9□□□□□ -1.3
SCN3A-210ENST00000640652 NEO1Q92859 1461 aa6.9□□□□□ -1.3
SCN3A-210ENST00000640652 C8orf34Q49A92 452 aa6.9□□□□□ -1.31
SCN3A-210ENST00000640652 ALDH1L2Q3SY69 923 aa6.9□□□□□ -1.31
SCN3A-210ENST00000640652 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.9□□□□□ -1.31
SCN3A-210ENST00000640652 RTF1Q92541 710 aaKnown RBP6.89□□□□□ -1.31
SCN3A-210ENST00000640652 COG3Q96JB2 828 aa6.89□□□□□ -1.31
SCN3A-210ENST00000640652 NCBP3Q53F19 620 aaKnown RBP6.89□□□□□ -1.31
SCN3A-210ENST00000640652 SLC12A5Q9H2X9 1139 aa6.89□□□□□ -1.31
SCN3A-210ENST00000640652 ADGRF5Q8IZF2 1346 aa6.89□□□□□ -1.31
SCN3A-210ENST00000640652 CHD4Q14839 1912 aa6.89□□□□□ -1.31
SCN3A-210ENST00000640652 GCC1Q96CN9 775 aa6.89□□□□□ -1.31
SCN3A-210ENST00000640652 ZNF521Q96K83 1311 aa6.89□□□□□ -1.31
SCN3A-210ENST00000640652 API5Q9BZZ5 524 aaKnown RBP6.89□□□□□ -1.31
SCN3A-210ENST00000640652 C14orf93Q9H972 538 aaKnown RBP6.89□□□□□ -1.31
SCN3A-210ENST00000640652 CIZ1Q9ULV3 898 aaPredicted RBP6.89□□□□□ -1.31
SCN3A-210ENST00000640652 MINK1Q8N4C8 1332 aaPredicted RBP6.88□□□□□ -1.31
SCN3A-210ENST00000640652 PIK3C2BO00750 1634 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 NRXN1Q9ULB1 1477 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 MON2Q7Z3U7 1717 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 SIGLEC1Q9BZZ2 1709 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 ANKRD45Q5TZF3 282 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 MRE11P49959 708 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 TBC1D32Q96NH3 1257 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 PDZRN3Q9UPQ7 1066 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 MROH1Q8NDA8 1641 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 CABP2Q9NPB3 220 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 ADGRB2O60241 1585 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 FCHSD2O94868 740 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 OSCARQ8IYS5 282 aa6.88□□□□□ -1.31
SCN3A-210ENST00000640652 PTMAP06454 111 aaKnown RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 TMEM132EQ6IEE7 984 aa6.87□□□□□ -1.31
SCN3A-210ENST00000640652 HDAC1Q13547 482 aaPredicted RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 AFDNP55196 1824 aaKnown RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 STK31Q9BXU1 1019 aa6.87□□□□□ -1.31
SCN3A-210ENST00000640652 NUTM2DQ5VT03 806 aaPredicted RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 BRPF3Q9ULD4 1205 aa6.87□□□□□ -1.31
SCN3A-210ENST00000640652 CDC45O75419 566 aa6.87□□□□□ -1.31
SCN3A-210ENST00000640652 SENP3Q9H4L4 574 aaPredicted RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 MLH3Q9UHC1 1453 aa6.87□□□□□ -1.31
SCN3A-210ENST00000640652 INTS3Q68E01 1043 aaKnown RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 NOB1Q9ULX3 412 aaKnown RBP6.87□□□□□ -1.31
SCN3A-210ENST00000640652 NPATQ14207 1427 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 TMPOP42166 694 aaKnown RBP6.86□□□□□ -1.31
SCN3A-210ENST00000640652 RABEP1Q15276 862 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 NEXMIFQ5QGS0 1516 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 NUCB2P80303 420 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 MYH7P12883 1935 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.86□□□□□ -1.31
SCN3A-210ENST00000640652 TRIM27P14373 513 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 GPATCH3Q96I76 525 aa6.86□□□□□ -1.31
SCN3A-210ENST00000640652 RGPD8O14715 1765 aaPredicted RBP6.85□□□□□ -1.31
SCN3A-210ENST00000640652 HDAC5Q9UQL6 1122 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 KNDC1Q76NI1 1749 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 IFT57Q9NWB7 429 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 KIAA1211Q6ZU35 1233 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 ATP7BP35670 1465 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 LTN1O94822 1766 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 MED14O60244 1454 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 CHAF1AQ13111 956 aaPredicted RBP6.85□□□□□ -1.31
SCN3A-210ENST00000640652 CHD1LQ86WJ1 897 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 TSR2Q969E8 191 aaKnown RBP6.85□□□□□ -1.31
SCN3A-210ENST00000640652 PRAM1Q96QH2 718 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 IL27Q8NEV9 243 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 TMEM131LA2VDJ0 1609 aa6.85□□□□□ -1.31
SCN3A-210ENST00000640652 A0A1W2PP64 1363 aa6.84□□□□□ -1.31
SCN3A-210ENST00000640652 N4BP2Q86UW6 1770 aaPredicted RBP6.84□□□□□ -1.31
SCN3A-210ENST00000640652 IQSEC2Q5JU85 1478 aa6.84□□□□□ -1.31
SCN3A-210ENST00000640652 TRAK2O60296 914 aa6.84□□□□□ -1.31
SCN3A-210ENST00000640652 TRMT2AQ8IZ69 625 aaKnown RBP6.84□□□□□ -1.31
SCN3A-210ENST00000640652 SSH1Q8WYL5 1049 aa6.84□□□□□ -1.31
SCN3A-210ENST00000640652 CSPP1Q1MSJ5 1256 aa6.84□□□□□ -1.31
SCN3A-210ENST00000640652 BMP2KLQ5H9B9 411 aa6.84□□□□□ -1.31
SCN3A-210ENST00000640652 LNPKQ9C0E8 428 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms