RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NUTM2EB1AL46 878 aaPredicted RBP10.43□□□□□ -0.74
CD44-239ENST00000639002 SKIV2LQ15477 1246 aaKnown RBP10.43□□□□□ -0.74
CD44-239ENST00000639002 LINC01559Q495D7 138 aa10.43□□□□□ -0.74
CD44-239ENST00000639002 NUTM2DQ5VT03 806 aaPredicted RBP10.43□□□□□ -0.74
CD44-239ENST00000639002 NUTM2AQ8IVF1 878 aaPredicted RBP10.43□□□□□ -0.74
CD44-239ENST00000639002 PROCA1Q8NCQ7 364 aaPredicted RBP10.43□□□□□ -0.74
CD44-239ENST00000639002 DACH1Q9UI36 760 aa10.43□□□□□ -0.74
CD44-239ENST00000639002 CRIPAKQ8N1N5 446 aa10.42□□□□□ -0.74
CD44-239ENST00000639002 SH3D19Q5HYK7 790 aa10.41□□□□□ -0.74
CD44-239ENST00000639002 ZNF787Q6DD87 383 aa10.41□□□□□ -0.74
CD44-239ENST00000639002 DDRGK1Q96HY6 314 aa10.41□□□□□ -0.74
CD44-239ENST00000639002 CTHP32929 405 aa10.4□□□□□ -0.74
CD44-239ENST00000639002 ZNF511Q8NB15 262 aa10.4□□□□□ -0.74
CD44-239ENST00000639002 TSC1Q92574 1164 aa10.4□□□□□ -0.74
CD44-239ENST00000639002 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.4□□□□□ -0.74
CD44-239ENST00000639002 SMCPP49901 116 aaPredicted RBP10.39□□□□□ -0.75
CD44-239ENST00000639002 EHBP1Q8NDI1 1231 aa10.39□□□□□ -0.75
CD44-239ENST00000639002 HPS1Q92902 700 aa10.39□□□□□ -0.75
CD44-239ENST00000639002 CTDSPL2Q05D32 466 aa10.37□□□□□ -0.75
CD44-239ENST00000639002 CTC1Q2NKJ3 1217 aa10.36□□□□□ -0.75
CD44-239ENST00000639002 AXIN1O15169 862 aa10.35□□□□□ -0.75
CD44-239ENST00000639002 ALDH1A1P00352 501 aa10.35□□□□□ -0.75
CD44-239ENST00000639002 PPP2R2DQ66LE6 453 aa10.35□□□□□ -0.75
CD44-239ENST00000639002 FOXJ1Q92949 421 aa10.35□□□□□ -0.75
CD44-239ENST00000639002 VARSP26640 1264 aaKnown RBP10.33□□□□□ -0.76
CD44-239ENST00000639002 C4orf48Q5BLP8 95 aa10.33□□□□□ -0.76
CD44-239ENST00000639002 HELBQ8NG08 1087 aaPredicted RBP10.33□□□□□ -0.76
CD44-239ENST00000639002 BRPF1P55201 1214 aaPredicted RBP10.32□□□□□ -0.76
CD44-239ENST00000639002 NEUROD2Q15784 382 aa10.32□□□□□ -0.76
CD44-239ENST00000639002 TPRNQ4KMQ1 711 aa10.32□□□□□ -0.76
CD44-239ENST00000639002 TLL2Q9Y6L7 1015 aa10.32□□□□□ -0.76
CD44-239ENST00000639002 LRRN4Q8WUT4 740 aa10.31□□□□□ -0.76
CD44-239ENST00000639002 MPNDQ8N594 471 aa10.3□□□□□ -0.76
CD44-239ENST00000639002 GMPR2Q9P2T1 348 aaKnown RBP10.3□□□□□ -0.76
CD44-239ENST00000639002 IL27Q8NEV9 243 aa10.29□□□□□ -0.76
CD44-239ENST00000639002 ZNF775Q96BV0 537 aaPredicted RBP10.28□□□□□ -0.76
CD44-239ENST00000639002 SH3RF1Q7Z6J0 888 aa10.27□□□□□ -0.77
CD44-239ENST00000639002 GOPCQ9HD26 462 aa10.27□□□□□ -0.77
CD44-239ENST00000639002 ATP13A2Q9NQ11 1180 aa10.27□□□□□ -0.77
CD44-239ENST00000639002 CDK15Q96Q40 435 aa10.26□□□□□ -0.77
CD44-239ENST00000639002 WASF2Q9Y6W5 498 aa10.26□□□□□ -0.77
CD44-239ENST00000639002 SH3BP5LQ7L8J4 393 aa10.25□□□□□ -0.77
CD44-239ENST00000639002 ARMC2Q8NEN0 867 aa10.25□□□□□ -0.77
CD44-239ENST00000639002 FAM174AQ8TBP5 190 aa10.25□□□□□ -0.77
CD44-239ENST00000639002 ATP1B4Q9UN42 357 aaPredicted RBP10.25□□□□□ -0.77
CD44-239ENST00000639002 AP1G2O75843 785 aa10.24□□□□□ -0.77
CD44-239ENST00000639002 RFC5P40937 340 aa10.24□□□□□ -0.77
CD44-239ENST00000639002 NR6A1Q15406 480 aa10.24□□□□□ -0.77
CD44-239ENST00000639002 BPHLQ86WA6 291 aaPredicted RBP10.24□□□□□ -0.77
CD44-239ENST00000639002 EPS8L1Q8TE68 723 aa10.23□□□□□ -0.77
CD44-239ENST00000639002 C1QTNF2Q9BXJ5 285 aa10.23□□□□□ -0.77
CD44-239ENST00000639002 KLF16Q9BXK1 252 aaPredicted RBP10.23□□□□□ -0.77
CD44-239ENST00000639002 GRM5P41594 1212 aa10.22□□□□□ -0.77
CD44-239ENST00000639002 NNTQ13423 1086 aa10.22□□□□□ -0.77
CD44-239ENST00000639002 AGERQ15109 404 aa10.22□□□□□ -0.77
CD44-239ENST00000639002 HMX1Q9NP08 348 aaPredicted RBP10.22□□□□□ -0.77
CD44-239ENST00000639002 C11orf95C9JLR9 678 aaPredicted RBP10.21□□□□□ -0.77
CD44-239ENST00000639002 CAPN5O15484 640 aaPredicted RBP10.21□□□□□ -0.77
CD44-239ENST00000639002 ADH1CP00326 375 aa10.21□□□□□ -0.77
CD44-239ENST00000639002 SNRPBP14678 240 aaKnown RBP10.2□□□□□ -0.78
CD44-239ENST00000639002 ARID5BQ14865 1188 aa10.2□□□□□ -0.78
CD44-239ENST00000639002 NBPF14Q5TI25 921 aa10.2□□□□□ -0.78
CD44-239ENST00000639002 TRIM46Q7Z4K8 759 aa10.2□□□□□ -0.78
CD44-239ENST00000639002 PCMTD1Q96MG8 357 aaPredicted RBP10.2□□□□□ -0.78
CD44-239ENST00000639002 FKBPLQ9UIM3 349 aa10.2□□□□□ -0.78
CD44-239ENST00000639002 NR3C2P08235 984 aa10.19□□□□□ -0.78
CD44-239ENST00000639002 USP17L8P0C7I0 530 aa10.19□□□□□ -0.78
CD44-239ENST00000639002 GPKOWQ92917 476 aaPredicted RBP eCLIP10.19□□□□□ -0.78
CD44-239ENST00000639002 OCSTAMPQ9BR26 566 aa10.19□□□□□ -0.78
CD44-239ENST00000639002 BMP1P13497 986 aa10.18□□□□□ -0.78
CD44-239ENST00000639002 TIMP2P16035 220 aa10.18□□□□□ -0.78
CD44-239ENST00000639002 PDXDC2PQ6P474 469 aa10.18□□□□□ -0.78
CD44-239ENST00000639002 TRMT44Q8IYL2 757 aaKnown RBP10.18□□□□□ -0.78
CD44-239ENST00000639002 TRIM47Q96LD4 638 aa10.18□□□□□ -0.78
CD44-239ENST00000639002 MAGEB6P1A0A0J9YX57 407 aa10.17□□□□□ -0.78
CD44-239ENST00000639002 PRKCSHP14314 528 aaPredicted RBP10.16□□□□□ -0.78
CD44-239ENST00000639002 ERFEQ4G0M1 354 aa10.16□□□□□ -0.78
CD44-239ENST00000639002 CARD14Q9BXL6 1004 aa10.16□□□□□ -0.78
CD44-239ENST00000639002 WDR4P57081 412 aaKnown RBP10.15□□□□□ -0.78
CD44-239ENST00000639002 NR5A1Q13285 461 aa10.15□□□□□ -0.78
CD44-239ENST00000639002 LCE2AQ5TA79 106 aaPredicted RBP10.15□□□□□ -0.78
CD44-239ENST00000639002 TRIM34Q9BYJ4 488 aa10.15□□□□□ -0.78
CD44-239ENST00000639002 MAP4K5Q9Y4K4 846 aa10.15□□□□□ -0.78
CD44-239ENST00000639002 SENP2Q9HC62 589 aa10.14□□□□□ -0.79
CD44-239ENST00000639002 TMEM259Q4ZIN3 620 aa10.13□□□□□ -0.79
CD44-239ENST00000639002 ITPKCQ96DU7 683 aa10.13□□□□□ -0.79
CD44-239ENST00000639002 ARHGAP9Q9BRR9 750 aa10.13□□□□□ -0.79
CD44-239ENST00000639002 ZFAND3Q9H8U3 227 aa10.13□□□□□ -0.79
CD44-239ENST00000639002 ZC3H4Q9UPT8 1303 aaKnown RBP10.12□□□□□ -0.79
CD44-239ENST00000639002 ZIC2O95409 532 aaPredicted RBP10.11□□□□□ -0.79
CD44-239ENST00000639002 VASH1Q7L8A9 365 aaPredicted RBP10.11□□□□□ -0.79
CD44-239ENST00000639002 GJD4Q96KN9 370 aaPredicted RBP10.11□□□□□ -0.79
CD44-239ENST00000639002 ZFP42Q96MM3 310 aa10.11□□□□□ -0.79
CD44-239ENST00000639002 FSHRP23945 695 aa10.1□□□□□ -0.79
CD44-239ENST00000639002 KIFC2Q96AC6 838 aa10.1□□□□□ -0.79
CD44-239ENST00000639002 MRPL14Q6P1L8 145 aaKnown RBP10.09□□□□□ -0.79
CD44-239ENST00000639002 TREML4Q6UXN2 200 aa10.09□□□□□ -0.79
CD44-239ENST00000639002 PTK2Q05397 1052 aa10.08□□□□□ -0.8
CD44-239ENST00000639002 ADAM32Q8TC27 787 aa10.08□□□□□ -0.8
CD44-239ENST00000639002 GPSM3Q9Y4H4 160 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms