RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 ACEP12821 1306 aa11.36□□□□□ -0.59
PNKP-229ENST00000637897 NWD2Q9ULI1 1742 aa11.36□□□□□ -0.59
PNKP-229ENST00000637897 ONECUT3O60422 494 aaPredicted RBP11.36□□□□□ -0.59
PNKP-229ENST00000637897 VPS72Q15906 364 aa11.36□□□□□ -0.59
PNKP-229ENST00000637897 LMOD2Q6P5Q4 547 aa11.36□□□□□ -0.59
PNKP-229ENST00000637897 CABP2Q9NPB3 220 aa11.36□□□□□ -0.59
PNKP-229ENST00000637897 CENPJQ9HC77 1338 aaPredicted RBP11.35□□□□□ -0.59
PNKP-229ENST00000637897 ITSN1Q15811 1721 aa11.35□□□□□ -0.59
PNKP-229ENST00000637897 NGDNQ8NEJ9 315 aaKnown RBP11.35□□□□□ -0.59
PNKP-229ENST00000637897 CCDC61Q9Y6R9 512 aa11.35□□□□□ -0.59
PNKP-229ENST00000637897 EIF3AQ14152 1382 aaKnown RBP11.35□□□□□ -0.59
PNKP-229ENST00000637897 QRICH2Q9H0J4 1663 aa11.35□□□□□ -0.59
PNKP-229ENST00000637897 SSH2Q76I76 1423 aa11.35□□□□□ -0.59
PNKP-229ENST00000637897 GPRASP1Q5JY77 1395 aa11.34□□□□□ -0.59
PNKP-229ENST00000637897 NUTM2GQ5VZR2 741 aa11.34□□□□□ -0.59
PNKP-229ENST00000637897 PHRF1Q9P1Y6 1649 aaKnown RBP11.34□□□□□ -0.59
PNKP-229ENST00000637897 KIAA0232Q92628 1395 aa11.32□□□□□ -0.6
PNKP-229ENST00000637897 COL14A1Q05707 1796 aaKnown RBP11.32□□□□□ -0.6
PNKP-229ENST00000637897 SEPT12Q8IYM1 358 aa11.32□□□□□ -0.6
PNKP-229ENST00000637897 BTG4Q9NY30 223 aa11.32□□□□□ -0.6
PNKP-229ENST00000637897 PPIP5K1Q6PFW1 1433 aa11.32□□□□□ -0.6
PNKP-229ENST00000637897 NRKQ7Z2Y5 1582 aa11.32□□□□□ -0.6
PNKP-229ENST00000637897 USP19O94966 1318 aa11.32□□□□□ -0.6
PNKP-229ENST00000637897 ATAD2Q6PL18 1390 aa11.31□□□□□ -0.6
PNKP-229ENST00000637897 PAK3O75914 559 aaPredicted RBP11.31□□□□□ -0.6
PNKP-229ENST00000637897 CHRNA2Q15822 529 aa11.31□□□□□ -0.6
PNKP-229ENST00000637897 CABP1Q9NZU7 370 aa11.31□□□□□ -0.6
PNKP-229ENST00000637897 SPATA31A5Q5VU36 1347 aa11.3□□□□□ -0.6
PNKP-229ENST00000637897 SPATA31A7Q8IWB4 1347 aa11.3□□□□□ -0.6
PNKP-229ENST00000637897 LMO7Q8WWI1 1683 aa11.3□□□□□ -0.6
PNKP-229ENST00000637897 CAMTA1Q9Y6Y1 1673 aa11.3□□□□□ -0.6
PNKP-229ENST00000637897 ROCK2O75116 1388 aaKnown RBP11.29□□□□□ -0.6
PNKP-229ENST00000637897 USP6P35125 1406 aa11.29□□□□□ -0.6
PNKP-229ENST00000637897 HAP1P54257 671 aaPredicted RBP11.29□□□□□ -0.6
PNKP-229ENST00000637897 ZC3H6P61129 1189 aaKnown RBP11.29□□□□□ -0.6
PNKP-229ENST00000637897 SRPK2P78362 688 aaKnown RBP11.29□□□□□ -0.6
PNKP-229ENST00000637897 THSD7AQ9UPZ6 1657 aa11.29□□□□□ -0.6
PNKP-229ENST00000637897 FAM98CQ17RN3 349 aaKnown RBP11.28□□□□□ -0.6
PNKP-229ENST00000637897 PIK3C2AO00443 1686 aa11.27□□□□□ -0.6
PNKP-229ENST00000637897 CD163L1Q9NR16 1453 aa11.27□□□□□ -0.6
PNKP-229ENST00000637897 CPDO75976 1380 aa11.27□□□□□ -0.61
PNKP-229ENST00000637897 CPSF1Q10570 1443 aaKnown RBP11.26□□□□□ -0.61
PNKP-229ENST00000637897 COL18A1P39060 1754 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 SLIT3O75094 1523 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 FAM182BQ5T319 152 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 DEFB132Q7Z7B7 95 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 ABTB2Q8N961 1025 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 PRDM11Q9NQV5 511 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 SPATA31A1Q5TZJ5 1347 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 AKAP12Q02952 1782 aa11.26□□□□□ -0.61
PNKP-229ENST00000637897 GCP02774 474 aa11.25□□□□□ -0.61
PNKP-229ENST00000637897 ZRANB1Q9UGI0 708 aa11.25□□□□□ -0.61
PNKP-229ENST00000637897 SBNO2Q9Y2G9 1366 aa11.25□□□□□ -0.61
PNKP-229ENST00000637897 LARP1Q6PKG0 1096 aaKnown RBP11.24□□□□□ -0.61
PNKP-229ENST00000637897 KRT27Q7Z3Y8 459 aa11.24□□□□□ -0.61
PNKP-229ENST00000637897 TESK2Q96S53 571 aa11.24□□□□□ -0.61
PNKP-229ENST00000637897 CCDC9Q9Y3X0 531 aaKnown RBP11.24□□□□□ -0.61
PNKP-229ENST00000637897 EVC2Q86UK5 1308 aa11.24□□□□□ -0.61
PNKP-229ENST00000637897 BLMP54132 1417 aaPredicted RBP11.24□□□□□ -0.61
PNKP-229ENST00000637897 AXIN2Q9Y2T1 843 aa11.23□□□□□ -0.61
PNKP-229ENST00000637897 TTC21BQ7Z4L5 1316 aa11.23□□□□□ -0.61
PNKP-229ENST00000637897 BRD4O60885 1362 aaPredicted RBP11.22□□□□□ -0.61
PNKP-229ENST00000637897 COL5A2P05997 1499 aaPredicted RBP11.22□□□□□ -0.61
PNKP-229ENST00000637897 CARD11Q9BXL7 1154 aa11.22□□□□□ -0.61
PNKP-229ENST00000637897 STRN4Q9NRL3 753 aa11.22□□□□□ -0.61
PNKP-229ENST00000637897 MON2Q7Z3U7 1717 aa11.21□□□□□ -0.61
PNKP-229ENST00000637897 NFAT5O94916 1531 aa11.21□□□□□ -0.61
PNKP-229ENST00000637897 NLRP6P59044 892 aa11.21□□□□□ -0.61
PNKP-229ENST00000637897 NLRP13Q86W25 1043 aa11.21□□□□□ -0.61
PNKP-229ENST00000637897 CCDC125Q86Z20 511 aa11.21□□□□□ -0.61
PNKP-229ENST00000637897 TONSLQ96HA7 1378 aa11.2□□□□□ -0.62
PNKP-229ENST00000637897 SLC12A5Q9H2X9 1139 aa11.2□□□□□ -0.62
PNKP-229ENST00000637897 AATKQ6ZMQ8 1374 aa11.19□□□□□ -0.62
PNKP-229ENST00000637897 TNS1Q9HBL0 1735 aaKnown RBP11.19□□□□□ -0.62
PNKP-229ENST00000637897 BARGINQ6ZT62 677 aa11.19□□□□□ -0.62
PNKP-229ENST00000637897 ARHGEF25Q86VW2 580 aa11.19□□□□□ -0.62
PNKP-229ENST00000637897 USP35Q9P2H5 1018 aa11.19□□□□□ -0.62
PNKP-229ENST00000637897 RGPD5Q99666 1765 aa11.18□□□□□ -0.62
PNKP-229ENST00000637897 USP54Q70EL1 1684 aa11.18□□□□□ -0.62
PNKP-229ENST00000637897 ST20-MTHFSA0A0A6YYL1 179 aa11.18□□□□□ -0.62
PNKP-229ENST00000637897 USP31Q70CQ4 1352 aa11.17□□□□□ -0.62
PNKP-229ENST00000637897 NME9Q86XW9 330 aa11.17□□□□□ -0.62
PNKP-229ENST00000637897 ZNF692Q9BU19 519 aaPredicted RBP11.17□□□□□ -0.62
PNKP-229ENST00000637897 A0A1W2PP64 1363 aa11.16□□□□□ -0.62
PNKP-229ENST00000637897 KTN1Q86UP2 1357 aaKnown RBP11.16□□□□□ -0.62
PNKP-229ENST00000637897 PEAK1Q9H792 1746 aa11.16□□□□□ -0.62
PNKP-229ENST00000637897 EN1Q05925 392 aaPredicted RBP11.16□□□□□ -0.62
PNKP-229ENST00000637897 PTF1AQ7RTS3 328 aa11.16□□□□□ -0.62
PNKP-229ENST00000637897 TCP11L2Q8N4U5 519 aa11.16□□□□□ -0.62
PNKP-229ENST00000637897 DISP2A7MBM2 1401 aa11.16□□□□□ -0.62
PNKP-229ENST00000637897 PARP4Q9UKK3 1724 aaKnown RBP11.15□□□□□ -0.62
PNKP-229ENST00000637897 TTC21AQ8NDW8 1320 aa11.15□□□□□ -0.62
PNKP-229ENST00000637897 A0A0G2JS52 829 aa11.15□□□□□ -0.62
PNKP-229ENST00000637897 ZEB1P37275 1124 aaPredicted RBP11.15□□□□□ -0.62
PNKP-229ENST00000637897 MYT1Q01538 1121 aa11.15□□□□□ -0.62
PNKP-229ENST00000637897 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.15□□□□□ -0.62
PNKP-229ENST00000637897 CRB1P82279 1406 aa11.15□□□□□ -0.62
PNKP-229ENST00000637897 LRRC37A3O60309 1634 aa11.14□□□□□ -0.63
PNKP-229ENST00000637897 SOX12O15370 315 aa11.14□□□□□ -0.63
PNKP-229ENST00000637897 FBLN1P23142 703 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms