RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 ZFAND3Q9H8U3 227 aa4.62□□□□□ -1.67
SCN1A-215ENST00000637285 RTN4Q9NQC3 1192 aaKnown RBP4.62□□□□□ -1.67
SCN1A-215ENST00000637285 EVA1BQ9NVM1 165 aa4.62□□□□□ -1.67
SCN1A-215ENST00000637285 ADAMTS8Q9UP79 889 aa4.62□□□□□ -1.67
SCN1A-215ENST00000637285 RNF225M0QZC1 329 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-215ENST00000637285 KCNH2Q12809 1159 aa4.61□□□□□ -1.67
SCN1A-215ENST00000637285 MAP2K5Q13163 448 aa4.61□□□□□ -1.67
SCN1A-215ENST00000637285 PTPRNQ16849 979 aa4.61□□□□□ -1.67
SCN1A-215ENST00000637285 GPAT2Q6NUI2 795 aa4.61□□□□□ -1.67
SCN1A-215ENST00000637285 KLF16Q9BXK1 252 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-215ENST00000637285 PCDHGC3Q9UN70 934 aa4.61□□□□□ -1.67
SCN1A-215ENST00000637285 IRF6O14896 467 aa4.6□□□□□ -1.67
SCN1A-215ENST00000637285 UPP2O95045 317 aa4.6□□□□□ -1.67
SCN1A-215ENST00000637285 KRT76Q01546 638 aa4.6□□□□□ -1.67
SCN1A-215ENST00000637285 MPNDQ8N594 471 aa4.6□□□□□ -1.67
SCN1A-215ENST00000637285 GPR161Q8N6U8 529 aaKnown RBP4.6□□□□□ -1.67
SCN1A-215ENST00000637285 FAM174AQ8TBP5 190 aa4.6□□□□□ -1.67
SCN1A-215ENST00000637285 ITPKCQ96DU7 683 aa4.6□□□□□ -1.67
SCN1A-215ENST00000637285 CTHP32929 405 aa4.59□□□□□ -1.67
SCN1A-215ENST00000637285 IRS1P35568 1242 aa4.59□□□□□ -1.67
SCN1A-215ENST00000637285 NDUFV2P19404 249 aa4.58□□□□□ -1.68
SCN1A-215ENST00000637285 SVOPQ8N4V2 548 aa4.58□□□□□ -1.68
SCN1A-215ENST00000637285 KRI1Q8N9T8 703 aaKnown RBP4.58□□□□□ -1.68
SCN1A-215ENST00000637285 PRR7Q8TB68 274 aa4.58□□□□□ -1.68
SCN1A-215ENST00000637285 COL25A1Q9BXS0 654 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-215ENST00000637285 GPCPD1Q9NPB8 672 aa4.58□□□□□ -1.68
SCN1A-215ENST00000637285 FAM217BQ9NTX9 383 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-215ENST00000637285 DNMT3LQ9UJW3 386 aa4.58□□□□□ -1.68
SCN1A-215ENST00000637285 NR3C2P08235 984 aa4.57□□□□□ -1.68
SCN1A-215ENST00000637285 CLCN1P35523 988 aa4.57□□□□□ -1.68
SCN1A-215ENST00000637285 AGERQ15109 404 aa4.57□□□□□ -1.68
SCN1A-215ENST00000637285 LINC00528Q8N1L1 170 aa4.57□□□□□ -1.68
SCN1A-215ENST00000637285 FOXJ1Q92949 421 aa4.57□□□□□ -1.68
SCN1A-215ENST00000637285 SOS2Q07890 1332 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-215ENST00000637285 MINK1Q8N4C8 1332 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-215ENST00000637285 MARSP56192 900 aaKnown RBP4.56□□□□□ -1.68
SCN1A-215ENST00000637285 NR5A1Q13285 461 aa4.56□□□□□ -1.68
SCN1A-215ENST00000637285 ZNF385CQ66K41 422 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-215ENST00000637285 WHAMMQ8TF30 809 aa4.56□□□□□ -1.68
SCN1A-215ENST00000637285 CCDC102AQ96A19 550 aa4.56□□□□□ -1.68
SCN1A-215ENST00000637285 CDK15Q96Q40 435 aa4.56□□□□□ -1.68
SCN1A-215ENST00000637285 DNMT3AQ9Y6K1 912 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-215ENST00000637285 MOXD2PA6NHM9 499 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 FIGNL2A6NMB9 653 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 SPTLC1O15269 473 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 IGHA1P01876 353 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 PTSQ03393 145 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.55□□□□□ -1.68
SCN1A-215ENST00000637285 RNFT1Q5M7Z0 435 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 MEIOBQ8N635 442 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 SPIRE2Q8WWL2 714 aa4.55□□□□□ -1.68
SCN1A-215ENST00000637285 TTLL8A6PVC2 850 aa4.54□□□□□ -1.68
SCN1A-215ENST00000637285 GRM5P41594 1212 aa4.54□□□□□ -1.68
SCN1A-215ENST00000637285 MTMR2Q13614 643 aa4.54□□□□□ -1.68
SCN1A-215ENST00000637285 XP32Q5T750 250 aa4.54□□□□□ -1.68
SCN1A-215ENST00000637285 CDC14CA4D256 554 aa4.53□□□□□ -1.68
SCN1A-215ENST00000637285 SSTR3P32745 418 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-215ENST00000637285 DESI1Q6ICB0 168 aa4.53□□□□□ -1.68
SCN1A-215ENST00000637285 TSEN34Q9BSV6 310 aaKnown RBP4.53□□□□□ -1.68
SCN1A-215ENST00000637285 MAP10Q9P2G4 905 aa4.53□□□□□ -1.68
SCN1A-215ENST00000637285 SPDYE5A6NIY4 337 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 FSHRP23945 695 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 FOXK2Q01167 660 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 C4orf48Q5BLP8 95 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 KANK3Q6NY19 840 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 LYPD8Q6UX82 237 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 VWA5B2Q8N398 1253 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 CCDC155Q8N6L0 562 aa4.52□□□□□ -1.69
SCN1A-215ENST00000637285 ARHGEF15O94989 841 aa4.51□□□□□ -1.69
SCN1A-215ENST00000637285 VASH1Q7L8A9 365 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-215ENST00000637285 BPHLQ86WA6 291 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-215ENST00000637285 NANOS1Q8WY41 292 aaKnown RBP4.51□□□□□ -1.69
SCN1A-215ENST00000637285 SCARF2Q96GP6 870 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-215ENST00000637285 SLURP2P0DP57 97 aa4.5□□□□□ -1.69
SCN1A-215ENST00000637285 SV2AQ7L0J3 742 aa4.5□□□□□ -1.69
SCN1A-215ENST00000637285 CFAP99D6REC4 459 aa4.49□□□□□ -1.69
SCN1A-215ENST00000637285 TULP1O00294 542 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-215ENST00000637285 MAP3K10Q02779 954 aa4.49□□□□□ -1.69
SCN1A-215ENST00000637285 CBLBQ13191 982 aa4.49□□□□□ -1.69
SCN1A-215ENST00000637285 EMILIN1Q9Y6C2 1016 aa4.49□□□□□ -1.69
SCN1A-215ENST00000637285 MAGEB6P1A0A0J9YX57 407 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 SLC35F4A4IF30 521 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 MSTNO14793 375 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 ADAM23O75077 832 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 ADAMTS2O95450 1211 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 F12P00748 615 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-215ENST00000637285 ITGA6P23229 1130 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 TTLL12Q14166 644 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-215ENST00000637285 LYPD4Q6UWN0 246 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 CCDC116Q8IYX3 515 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 TSC1Q92574 1164 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 PCDHB15Q9Y5E8 787 aa4.48□□□□□ -1.69
SCN1A-215ENST00000637285 CARD14Q9BXL6 1004 aa4.47□□□□□ -1.69
SCN1A-215ENST00000637285 PER1O15534 1290 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-215ENST00000637285 SPINT1O43278 529 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 HRCP23327 699 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 CSPP1Q1MSJ5 1256 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 PLA2G4EQ3MJ16 856 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 PPP1R26Q5T8A7 1209 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-215ENST00000637285 RSBN1LQ6PCB5 846 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms