RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PARD3Q8TEW0 1356 aa16.77■□□□□ 0.28
CLN3-257ENST00000637110 EZH2Q15910 746 aaKnown RBP16.77■□□□□ 0.28
CLN3-257ENST00000637110 RGPD8O14715 1765 aaPredicted RBP16.77■□□□□ 0.27
CLN3-257ENST00000637110 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
CLN3-257ENST00000637110 BTG4Q9NY30 223 aa16.76■□□□□ 0.27
CLN3-257ENST00000637110 COL14A1Q05707 1796 aaKnown RBP16.76■□□□□ 0.27
CLN3-257ENST00000637110 MINK1Q8N4C8 1332 aaPredicted RBP16.75■□□□□ 0.27
CLN3-257ENST00000637110 FAM182BQ5T319 152 aa16.75■□□□□ 0.27
CLN3-257ENST00000637110 PPP1R1BQ9UD71 204 aaPredicted RBP16.75■□□□□ 0.27
CLN3-257ENST00000637110 CAMKK2Q96RR4 588 aa16.74■□□□□ 0.27
CLN3-257ENST00000637110 HIRIP3Q9BW71 556 aaPredicted RBP16.74■□□□□ 0.27
CLN3-257ENST00000637110 THSD7AQ9UPZ6 1657 aa16.74■□□□□ 0.27
CLN3-257ENST00000637110 SPATA31A5Q5VU36 1347 aa16.73■□□□□ 0.27
CLN3-257ENST00000637110 SPATA31A7Q8IWB4 1347 aa16.73■□□□□ 0.27
CLN3-257ENST00000637110 ADGRB1O14514 1584 aa16.73■□□□□ 0.27
CLN3-257ENST00000637110 DLC1Q96QB1 1528 aa16.73■□□□□ 0.27
CLN3-257ENST00000637110 NBPF8Q3BBV2 869 aa16.72■□□□□ 0.27
CLN3-257ENST00000637110 NBPF14Q5TI25 921 aa16.72■□□□□ 0.27
CLN3-257ENST00000637110 FAM196AQ6ZSG2 479 aa16.72■□□□□ 0.27
CLN3-257ENST00000637110 APBA3O96018 575 aa16.71■□□□□ 0.27
CLN3-257ENST00000637110 NINLQ9Y2I6 1382 aa16.71■□□□□ 0.27
CLN3-257ENST00000637110 RREB1Q92766 1687 aa16.7■□□□□ 0.26
CLN3-257ENST00000637110 TRIM37O94972 964 aa16.7■□□□□ 0.26
CLN3-257ENST00000637110 L3MBTL2Q969R5 705 aa16.7■□□□□ 0.26
CLN3-257ENST00000637110 SPON1Q9HCB6 807 aa16.7■□□□□ 0.26
CLN3-257ENST00000637110 NBPF1Q3BBV0 1214 aa16.69■□□□□ 0.26
CLN3-257ENST00000637110 PMFBP1Q8TBY8 1022 aa16.68■□□□□ 0.26
CLN3-257ENST00000637110 NUP188Q5SRE5 1749 aa16.67■□□□□ 0.26
CLN3-257ENST00000637110 WASLO00401 505 aaPredicted RBP16.67■□□□□ 0.26
CLN3-257ENST00000637110 EIF3AQ14152 1382 aaKnown RBP16.66■□□□□ 0.26
CLN3-257ENST00000637110 ALS2Q96Q42 1657 aa16.65■□□□□ 0.26
CLN3-257ENST00000637110 GPRASP1Q5JY77 1395 aa16.65■□□□□ 0.26
CLN3-257ENST00000637110 TRPM3Q9HCF6 1732 aaPredicted RBP16.65■□□□□ 0.26
CLN3-257ENST00000637110 ANKARQ7Z5J8 1434 aa16.65■□□□□ 0.26
CLN3-257ENST00000637110 KCNQ2O43526 872 aa16.65■□□□□ 0.26
CLN3-257ENST00000637110 PRDM11Q9NQV5 511 aa16.64■□□□□ 0.25
CLN3-257ENST00000637110 KIAA1210Q9ULL0 1709 aa16.64■□□□□ 0.25
CLN3-257ENST00000637110 SPATA31A1Q5TZJ5 1347 aa16.64■□□□□ 0.25
CLN3-257ENST00000637110 ARHGEF28Q8N1W1 1705 aaKnown RBP16.62■□□□□ 0.25
CLN3-257ENST00000637110 PDE3BQ13370 1112 aa16.62■□□□□ 0.25
CLN3-257ENST00000637110 NGDNQ8NEJ9 315 aaKnown RBP16.62■□□□□ 0.25
CLN3-257ENST00000637110 CDK19Q9BWU1 502 aa16.62■□□□□ 0.25
CLN3-257ENST00000637110 CRYBG1Q9Y4K1 1723 aa16.6■□□□□ 0.25
CLN3-257ENST00000637110 SENP3-EIF4A1A0A087X0R7 540 aa16.6■□□□□ 0.25
CLN3-257ENST00000637110 NUDT16Q96DE0 195 aaKnown RBP16.6■□□□□ 0.25
CLN3-257ENST00000637110 PRR36Q9H6K5 1346 aa16.6■□□□□ 0.25
CLN3-257ENST00000637110 CENPJQ9HC77 1338 aaPredicted RBP16.6■□□□□ 0.25
CLN3-257ENST00000637110 TONSLQ96HA7 1378 aa16.6■□□□□ 0.25
CLN3-257ENST00000637110 TULP4Q9NRJ4 1543 aa16.6■□□□□ 0.25
CLN3-257ENST00000637110 CAMTA1Q9Y6Y1 1673 aa16.59■□□□□ 0.25
CLN3-257ENST00000637110 ZNF784Q8NCA9 323 aaPredicted RBP16.59■□□□□ 0.25
CLN3-257ENST00000637110 ROCK2O75116 1388 aaKnown RBP16.59■□□□□ 0.25
CLN3-257ENST00000637110 PAK3O75914 559 aaPredicted RBP16.58■□□□□ 0.24
CLN3-257ENST00000637110 SRPK2P78362 688 aaKnown RBP16.58■□□□□ 0.24
CLN3-257ENST00000637110 IFFO2Q5TF58 517 aa16.58■□□□□ 0.24
CLN3-257ENST00000637110 STRN4Q9NRL3 753 aa16.58■□□□□ 0.24
CLN3-257ENST00000637110 C11orf95C9JLR9 678 aaPredicted RBP16.57■□□□□ 0.24
CLN3-257ENST00000637110 BARGINQ6ZT62 677 aa16.57■□□□□ 0.24
CLN3-257ENST00000637110 KIAA0232Q92628 1395 aa16.55■□□□□ 0.24
CLN3-257ENST00000637110 USP35Q9P2H5 1018 aa16.55■□□□□ 0.24
CLN3-257ENST00000637110 CHD4Q14839 1912 aa16.55■□□□□ 0.24
CLN3-257ENST00000637110 RGPD3A6NKT7 1758 aaPredicted RBP16.54■□□□□ 0.24
CLN3-257ENST00000637110 RGPD4Q7Z3J3 1758 aa16.54■□□□□ 0.24
CLN3-257ENST00000637110 EVA1CP58658 441 aa16.54■□□□□ 0.24
CLN3-257ENST00000637110 CABP2Q9NPB3 220 aa16.54■□□□□ 0.24
CLN3-257ENST00000637110 CCDC61Q9Y6R9 512 aa16.54■□□□□ 0.24
CLN3-257ENST00000637110 TRPM1Q7Z4N2 1603 aa16.53■□□□□ 0.24
CLN3-257ENST00000637110 CHRNA2Q15822 529 aa16.53■□□□□ 0.24
CLN3-257ENST00000637110 PCGF6Q9BYE7 350 aa16.53■□□□□ 0.24
CLN3-257ENST00000637110 PHRF1Q9P1Y6 1649 aaKnown RBP16.52■□□□□ 0.24
CLN3-257ENST00000637110 NRKQ7Z2Y5 1582 aa16.52■□□□□ 0.24
CLN3-257ENST00000637110 C1QTNF8P60827 252 aa16.52■□□□□ 0.24
CLN3-257ENST00000637110 CARD11Q9BXL7 1154 aa16.52■□□□□ 0.24
CLN3-257ENST00000637110 ATP7BP35670 1465 aa16.52■□□□□ 0.23
CLN3-257ENST00000637110 SSH2Q76I76 1423 aa16.52■□□□□ 0.23
CLN3-257ENST00000637110 ITSN1Q15811 1721 aa16.51■□□□□ 0.23
CLN3-257ENST00000637110 TCP11L2Q8N4U5 519 aa16.51■□□□□ 0.23
CLN3-257ENST00000637110 CASZ1Q86V15 1759 aa16.51■□□□□ 0.23
CLN3-257ENST00000637110 ACEP12821 1306 aa16.5■□□□□ 0.23
CLN3-257ENST00000637110 EVC2Q86UK5 1308 aa16.5■□□□□ 0.23
CLN3-257ENST00000637110 QRICH2Q9H0J4 1663 aa16.5■□□□□ 0.23
CLN3-257ENST00000637110 THRAP3Q9Y2W1 955 aaKnown RBP16.5■□□□□ 0.23
CLN3-257ENST00000637110 UTRNP46939 3433 aa16.5■□□□□ 0.23
CLN3-257ENST00000637110 ZC3H6P61129 1189 aaKnown RBP16.49■□□□□ 0.23
CLN3-257ENST00000637110 PARP4Q9UKK3 1724 aaKnown RBP16.48■□□□□ 0.23
CLN3-257ENST00000637110 PLSCR1O15162 318 aa16.48■□□□□ 0.23
CLN3-257ENST00000637110 NUTM2GQ5VZR2 741 aa16.48■□□□□ 0.23
CLN3-257ENST00000637110 MYOM1P52179 1685 aa16.48■□□□□ 0.23
CLN3-257ENST00000637110 OVOS2A0A0G2JMS6 1433 aa16.47■□□□□ 0.23
CLN3-257ENST00000637110 OVOS2A0A0J9YW53 1432 aa16.47■□□□□ 0.23
CLN3-257ENST00000637110 OVOS2Q6IE36 1432 aa16.47■□□□□ 0.23
CLN3-257ENST00000637110 PPIP5K1Q6PFW1 1433 aa16.47■□□□□ 0.23
CLN3-257ENST00000637110 PLEKHG3A1L390 1219 aa16.47■□□□□ 0.23
CLN3-257ENST00000637110 CABP1Q9NZU7 370 aa16.46■□□□□ 0.23
CLN3-257ENST00000637110 LARP1Q6PKG0 1096 aaKnown RBP16.45■□□□□ 0.22
CLN3-257ENST00000637110 ABTB2Q8N961 1025 aa16.45■□□□□ 0.22
CLN3-257ENST00000637110 BCL11BQ9C0K0 894 aaPredicted RBP16.45■□□□□ 0.22
CLN3-257ENST00000637110 SBF2Q86WG5 1849 aa16.45■□□□□ 0.22
CLN3-257ENST00000637110 POLR3AO14802 1390 aaPredicted RBP16.44■□□□□ 0.22
CLN3-257ENST00000637110 ZBTB7AO95365 584 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms