RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SLIT1O75093 1534 aa20.48■□□□□ 0.87
CLN3-251ENST00000636853 ARHGAP23Q9P227 1491 aa20.47■□□□□ 0.87
CLN3-251ENST00000636853 PTPRUQ92729 1446 aa20.47■□□□□ 0.87
CLN3-251ENST00000636853 PRR36Q9H6K5 1346 aa20.47■□□□□ 0.87
CLN3-251ENST00000636853 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.46■□□□□ 0.87
CLN3-251ENST00000636853 THEMISQ8N1K5 641 aaPredicted RBP20.46■□□□□ 0.87
CLN3-251ENST00000636853 EDC4Q6P2E9 1401 aaKnown RBP20.45■□□□□ 0.86
CLN3-251ENST00000636853 NME9Q86XW9 330 aa20.45■□□□□ 0.86
CLN3-251ENST00000636853 PHF23Q9BUL5 403 aaPredicted RBP20.44■□□□□ 0.86
CLN3-251ENST00000636853 ZRANB1Q9UGI0 708 aa20.44■□□□□ 0.86
CLN3-251ENST00000636853 CDC42BPGQ6DT37 1551 aa20.44■□□□□ 0.86
CLN3-251ENST00000636853 NUTM2FA1L443 756 aa20.43■□□□□ 0.86
CLN3-251ENST00000636853 PPM1GO15355 546 aaPredicted RBP20.43■□□□□ 0.86
CLN3-251ENST00000636853 DIAPH1O60610 1272 aaKnown RBP20.43■□□□□ 0.86
CLN3-251ENST00000636853 AMOTL2Q9Y2J4 779 aa20.43■□□□□ 0.86
CLN3-251ENST00000636853 PNPLA6Q8IY17 1366 aa20.42■□□□□ 0.86
CLN3-251ENST00000636853 POLKQ9UBT6 870 aa20.42■□□□□ 0.86
CLN3-251ENST00000636853 PLEKHF1Q96S99 279 aa20.42■□□□□ 0.86
CLN3-251ENST00000636853 MON2Q7Z3U7 1717 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 BCAR3O75815 825 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 TBX22Q9Y458 520 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 MAP2P11137 1827 aaKnown RBP20.41■□□□□ 0.86
CLN3-251ENST00000636853 ADGRB2O60241 1585 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 CCDC27Q2M243 656 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 WDR63Q8IWG1 891 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 ITSN1Q15811 1721 aa20.41■□□□□ 0.86
CLN3-251ENST00000636853 AKAP12Q02952 1782 aa20.4■□□□□ 0.86
CLN3-251ENST00000636853 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.4■□□□□ 0.86
CLN3-251ENST00000636853 RIMS1Q86UR5 1692 aaKnown RBP20.39■□□□□ 0.85
CLN3-251ENST00000636853 ZNF692Q9BU19 519 aaPredicted RBP20.38■□□□□ 0.85
CLN3-251ENST00000636853 EMILIN1Q9Y6C2 1016 aa20.38■□□□□ 0.85
CLN3-251ENST00000636853 MAPK8IP3Q9UPT6 1336 aa20.37■□□□□ 0.85
CLN3-251ENST00000636853 COG3Q96JB2 828 aa20.37■□□□□ 0.85
CLN3-251ENST00000636853 TMPOP42166 694 aaKnown RBP20.36■□□□□ 0.85
CLN3-251ENST00000636853 BCL11AQ9H165 835 aa20.36■□□□□ 0.85
CLN3-251ENST00000636853 NCBP3Q53F19 620 aaKnown RBP20.36■□□□□ 0.85
CLN3-251ENST00000636853 ACEP12821 1306 aa20.35■□□□□ 0.85
CLN3-251ENST00000636853 CEP170BQ9Y4F5 1589 aaPredicted RBP20.35■□□□□ 0.85
CLN3-251ENST00000636853 TOPAZ1Q8N9V7 1692 aa20.34■□□□□ 0.85
CLN3-251ENST00000636853 RRS1Q15050 365 aaKnown RBP20.33■□□□□ 0.84
CLN3-251ENST00000636853 TRIM35Q9UPQ4 493 aa20.33■□□□□ 0.84
CLN3-251ENST00000636853 DIP2AQ14689 1571 aa20.33■□□□□ 0.84
CLN3-251ENST00000636853 PTCH1Q13635 1447 aa20.32■□□□□ 0.84
CLN3-251ENST00000636853 PLEKHG3A1L390 1219 aa20.32■□□□□ 0.84
CLN3-251ENST00000636853 TTC21BQ7Z4L5 1316 aa20.32■□□□□ 0.84
CLN3-251ENST00000636853 AATKQ6ZMQ8 1374 aa20.31■□□□□ 0.84
CLN3-251ENST00000636853 FCHSD2O94868 740 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 RIPK4P57078 832 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 PNNQ9H307 717 aaKnown RBP20.3■□□□□ 0.84
CLN3-251ENST00000636853 MYH16Q9H6N6 1097 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 LRRC7Q96NW7 1537 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 HMOX1P09601 288 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 PRKAR2BP31323 418 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 RSPH6AQ9H0K4 717 aa20.3■□□□□ 0.84
CLN3-251ENST00000636853 NRKQ7Z2Y5 1582 aa20.29■□□□□ 0.84
CLN3-251ENST00000636853 PMFBP1Q8TBY8 1022 aa20.29■□□□□ 0.84
CLN3-251ENST00000636853 CDK12Q9NYV4 1490 aaPredicted RBP20.29■□□□□ 0.84
CLN3-251ENST00000636853 KCNA6P17658 529 aa20.29■□□□□ 0.84
CLN3-251ENST00000636853 RARSP54136 660 aaKnown RBP20.29■□□□□ 0.84
CLN3-251ENST00000636853 XRN1Q8IZH2 1706 aaKnown RBP20.29■□□□□ 0.84
CLN3-251ENST00000636853 USP6P35125 1406 aa20.28■□□□□ 0.84
CLN3-251ENST00000636853 IL13P35225 146 aa20.28■□□□□ 0.84
CLN3-251ENST00000636853 TSR2Q969E8 191 aaKnown RBP20.28■□□□□ 0.84
CLN3-251ENST00000636853 FANCIQ9NVI1 1328 aa20.28■□□□□ 0.84
CLN3-251ENST00000636853 RGPD8O14715 1765 aaPredicted RBP20.27■□□□□ 0.84
CLN3-251ENST00000636853 CANXP27824 592 aaKnown RBP20.27■□□□□ 0.84
CLN3-251ENST00000636853 FRAT1Q92837 279 aaPredicted RBP20.27■□□□□ 0.83
CLN3-251ENST00000636853 BCL2L13Q9BXK5 485 aa20.26■□□□□ 0.83
CLN3-251ENST00000636853 ADAMTSL3P82987 1691 aa20.25■□□□□ 0.83
CLN3-251ENST00000636853 PHACTR3Q96KR7 559 aa20.25■□□□□ 0.83
CLN3-251ENST00000636853 ANKLE2Q86XL3 938 aa20.24■□□□□ 0.83
CLN3-251ENST00000636853 NEFMP07197 916 aa20.24■□□□□ 0.83
CLN3-251ENST00000636853 PANK1Q8TE04 598 aa20.24■□□□□ 0.83
CLN3-251ENST00000636853 OVOS2A0A0J9YW53 1432 aa20.23■□□□□ 0.83
CLN3-251ENST00000636853 OVOS2Q6IE36 1432 aa20.23■□□□□ 0.83
CLN3-251ENST00000636853 PDE3AQ14432 1141 aa20.23■□□□□ 0.83
CLN3-251ENST00000636853 SKAP1Q86WV1 359 aa20.23■□□□□ 0.83
CLN3-251ENST00000636853 NGDNQ8NEJ9 315 aaKnown RBP20.23■□□□□ 0.83
CLN3-251ENST00000636853 KDM2BQ8NHM5 1336 aa20.22■□□□□ 0.83
CLN3-251ENST00000636853 EXOSC9Q06265 439 aaKnown RBP20.22■□□□□ 0.83
CLN3-251ENST00000636853 SSH2Q76I76 1423 aa20.22■□□□□ 0.83
CLN3-251ENST00000636853 PIK3R4Q99570 1358 aa20.22■□□□□ 0.83
CLN3-251ENST00000636853 SOX12O15370 315 aa20.22■□□□□ 0.83
CLN3-251ENST00000636853 COG6Q9Y2V7 657 aa20.21■□□□□ 0.83
CLN3-251ENST00000636853 ZNF142P52746 1687 aaPredicted RBP20.21■□□□□ 0.83
CLN3-251ENST00000636853 IL16Q14005 1332 aa20.21■□□□□ 0.83
CLN3-251ENST00000636853 TNNQ9UQP3 1299 aa20.2■□□□□ 0.82
CLN3-251ENST00000636853 NFE2L2Q16236 605 aa20.2■□□□□ 0.82
CLN3-251ENST00000636853 TCERG1O14776 1098 aaKnown RBP20.19■□□□□ 0.82
CLN3-251ENST00000636853 CENPQQ7L2Z9 268 aaPredicted RBP20.19■□□□□ 0.82
CLN3-251ENST00000636853 SETD1BQ9UPS6 1966 aaKnown RBP20.19■□□□□ 0.82
CLN3-251ENST00000636853 RBM33Q96EV2 1170 aaKnown RBP20.18■□□□□ 0.82
CLN3-251ENST00000636853 NALCNQ8IZF0 1738 aa20.18■□□□□ 0.82
CLN3-251ENST00000636853 EIF4A2Q14240 407 aaKnown RBP20.17■□□□□ 0.82
CLN3-251ENST00000636853 TTC21AQ8NDW8 1320 aa20.17■□□□□ 0.82
CLN3-251ENST00000636853 CHD2O14647 1828 aaKnown RBP20.17■□□□□ 0.82
CLN3-251ENST00000636853 RLBP1P12271 317 aa20.16■□□□□ 0.82
CLN3-251ENST00000636853 THUMPD2Q9BTF0 503 aaKnown RBP20.16■□□□□ 0.82
CLN3-251ENST00000636853 DNAJC5Q9H3Z4 198 aa20.16■□□□□ 0.82
CLN3-251ENST00000636853 USP31Q70CQ4 1352 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms