RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 AATKQ6ZMQ8 1374 aa14.19□□□□□ -0.14
CLN3-248ENST00000636355 CDK12Q9NYV4 1490 aaPredicted RBP14.18□□□□□ -0.14
CLN3-248ENST00000636355 TTC21AQ8NDW8 1320 aa14.18□□□□□ -0.14
CLN3-248ENST00000636355 PIK3C2AO00443 1686 aa14.18□□□□□ -0.14
CLN3-248ENST00000636355 FAM9BQ8IZU0 186 aa14.18□□□□□ -0.14
CLN3-248ENST00000636355 COL3A1P02461 1466 aaPredicted RBP14.18□□□□□ -0.14
CLN3-248ENST00000636355 XIRP1Q702N8 1843 aaKnown RBP14.18□□□□□ -0.14
CLN3-248ENST00000636355 MAP2P11137 1827 aaKnown RBP14.17□□□□□ -0.14
CLN3-248ENST00000636355 FYB1O15117 783 aa14.16□□□□□ -0.14
CLN3-248ENST00000636355 CFAP53Q96M91 514 aa14.16□□□□□ -0.14
CLN3-248ENST00000636355 MARF1Q9Y4F3 1742 aaKnown RBP14.15□□□□□ -0.14
CLN3-248ENST00000636355 CNGB1Q14028 1251 aaPredicted RBP14.15□□□□□ -0.14
CLN3-248ENST00000636355 WDR43Q15061 677 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLN3-248ENST00000636355 NGEFQ8N5V2 710 aa14.15□□□□□ -0.14
CLN3-248ENST00000636355 ACEP12821 1306 aa14.15□□□□□ -0.15
CLN3-248ENST00000636355 USP31Q70CQ4 1352 aa14.14□□□□□ -0.15
CLN3-248ENST00000636355 PNPLA6Q8IY17 1366 aa14.14□□□□□ -0.15
CLN3-248ENST00000636355 DMRT2Q9Y5R5 561 aa14.14□□□□□ -0.15
CLN3-248ENST00000636355 TRPM3Q9HCF6 1732 aaPredicted RBP14.13□□□□□ -0.15
CLN3-248ENST00000636355 PHRF1Q9P1Y6 1649 aaKnown RBP14.13□□□□□ -0.15
CLN3-248ENST00000636355 MST1RQ04912 1400 aa14.12□□□□□ -0.15
CLN3-248ENST00000636355 TTC21BQ7Z4L5 1316 aa14.12□□□□□ -0.15
CLN3-248ENST00000636355 IQSEC2Q5JU85 1478 aa14.11□□□□□ -0.15
CLN3-248ENST00000636355 KIF24Q5T7B8 1368 aa14.1□□□□□ -0.15
CLN3-248ENST00000636355 COG3Q96JB2 828 aa14.1□□□□□ -0.15
CLN3-248ENST00000636355 GGNBP2Q9H3C7 697 aa14.1□□□□□ -0.15
CLN3-248ENST00000636355 C19orf44Q9H6X5 657 aa14.1□□□□□ -0.15
CLN3-248ENST00000636355 C1orf167Q5SNV9 1468 aa14.1□□□□□ -0.15
CLN3-248ENST00000636355 TMEM94Q12767 1356 aa14.09□□□□□ -0.15
CLN3-248ENST00000636355 NCBP3Q53F19 620 aaKnown RBP14.09□□□□□ -0.15
CLN3-248ENST00000636355 MSH6P52701 1360 aa14.09□□□□□ -0.15
CLN3-248ENST00000636355 ALS2Q96Q42 1657 aa14.08□□□□□ -0.16
CLN3-248ENST00000636355 MTHFSP49914 203 aa14.08□□□□□ -0.16
CLN3-248ENST00000636355 PDE3BQ13370 1112 aa14.08□□□□□ -0.16
CLN3-248ENST00000636355 PROSER2Q86WR7 435 aaPredicted RBP14.08□□□□□ -0.16
CLN3-248ENST00000636355 NGDNQ8NEJ9 315 aaKnown RBP14.08□□□□□ -0.16
CLN3-248ENST00000636355 C14orf37Q86TY3 774 aa14.07□□□□□ -0.16
CLN3-248ENST00000636355 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLN3-248ENST00000636355 PHF8Q9UPP1 1060 aa14.07□□□□□ -0.16
CLN3-248ENST00000636355 RGPD1P0DJD0 1748 aa14.07□□□□□ -0.16
CLN3-248ENST00000636355 NME9Q86XW9 330 aa14.06□□□□□ -0.16
CLN3-248ENST00000636355 NUDCQ9Y266 331 aa14.06□□□□□ -0.16
CLN3-248ENST00000636355 SLIT3O75094 1523 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 MED1Q15648 1581 aaPredicted RBP14.05□□□□□ -0.16
CLN3-248ENST00000636355 PEAK1Q9H792 1746 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 LTN1O94822 1766 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 CADPS2Q86UW7 1296 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 ADAMTS8Q9UP79 889 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 RTL1A6NKG5 1358 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 ABCC6O95255 1503 aa14.05□□□□□ -0.16
CLN3-248ENST00000636355 NFAT5O94916 1531 aa14.04□□□□□ -0.16
CLN3-248ENST00000636355 ATF3P18847 181 aa14.03□□□□□ -0.16
CLN3-248ENST00000636355 TNNT2P45379 298 aaPredicted RBP14.03□□□□□ -0.16
CLN3-248ENST00000636355 NUTM2FA1L443 756 aa14.02□□□□□ -0.17
CLN3-248ENST00000636355 PNNQ9H307 717 aaKnown RBP14.02□□□□□ -0.17
CLN3-248ENST00000636355 POLKQ9UBT6 870 aa14.02□□□□□ -0.17
CLN3-248ENST00000636355 CRYBG1Q9Y4K1 1723 aa14.01□□□□□ -0.17
CLN3-248ENST00000636355 NHSL1Q5SYE7 1610 aa14.01□□□□□ -0.17
CLN3-248ENST00000636355 SBNO1A3KN83 1393 aa14.01□□□□□ -0.17
CLN3-248ENST00000636355 FLT4P35916 1363 aa14.01□□□□□ -0.17
CLN3-248ENST00000636355 PMFBP1Q8TBY8 1022 aa14.01□□□□□ -0.17
CLN3-248ENST00000636355 ZNF521Q96K83 1311 aa14□□□□□ -0.17
CLN3-248ENST00000636355 DIAPH1O60610 1272 aaKnown RBP14□□□□□ -0.17
CLN3-248ENST00000636355 RUNDC1Q96C34 613 aa14□□□□□ -0.17
CLN3-248ENST00000636355 PXDNQ92626 1479 aa13.99□□□□□ -0.17
CLN3-248ENST00000636355 ESCO1Q5FWF5 840 aa13.99□□□□□ -0.17
CLN3-248ENST00000636355 NPHP3Q7Z494 1330 aa13.98□□□□□ -0.17
CLN3-248ENST00000636355 FAM208AQ9UK61 1670 aaKnown RBP13.98□□□□□ -0.17
CLN3-248ENST00000636355 USP19O94966 1318 aa13.97□□□□□ -0.17
CLN3-248ENST00000636355 ZNF335Q9H4Z2 1342 aaPredicted RBP13.97□□□□□ -0.17
CLN3-248ENST00000636355 CCDC27Q2M243 656 aa13.97□□□□□ -0.17
CLN3-248ENST00000636355 CAMTA1Q9Y6Y1 1673 aa13.97□□□□□ -0.17
CLN3-248ENST00000636355 TNS3Q68CZ2 1445 aa13.97□□□□□ -0.17
CLN3-248ENST00000636355 ARHGEF10O15013 1369 aa13.96□□□□□ -0.17
CLN3-248ENST00000636355 LTBP4Q8N2S1 1624 aa13.96□□□□□ -0.17
CLN3-248ENST00000636355 FCHSD2O94868 740 aa13.95□□□□□ -0.18
CLN3-248ENST00000636355 U2AF1L5P0DN76 240 aaPredicted RBP13.95□□□□□ -0.18
CLN3-248ENST00000636355 U2AF1Q01081 240 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLN3-248ENST00000636355 PSME1Q06323 249 aa13.95□□□□□ -0.18
CLN3-248ENST00000636355 KCNH5Q8NCM2 988 aa13.95□□□□□ -0.18
CLN3-248ENST00000636355 PHF23Q9BUL5 403 aaPredicted RBP13.95□□□□□ -0.18
CLN3-248ENST00000636355 EMILIN1Q9Y6C2 1016 aa13.95□□□□□ -0.18
CLN3-248ENST00000636355 NLRP6P59044 892 aa13.94□□□□□ -0.18
CLN3-248ENST00000636355 ABTB2Q8N961 1025 aa13.94□□□□□ -0.18
CLN3-248ENST00000636355 RBM33Q96EV2 1170 aaKnown RBP13.94□□□□□ -0.18
CLN3-248ENST00000636355 ABCA3Q99758 1704 aa13.94□□□□□ -0.18
CLN3-248ENST00000636355 ZRANB1Q9UGI0 708 aa13.94□□□□□ -0.18
CLN3-248ENST00000636355 MAP3K19Q56UN5 1328 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 MAPK8IP3Q9UPT6 1336 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 UBAP1LF5GYI3 381 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 IL13P35225 146 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 ORAI2Q96SN7 254 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 GTF3C3Q9Y5Q9 886 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 KDRP35968 1356 aa13.93□□□□□ -0.18
CLN3-248ENST00000636355 DLG5Q8TDM6 1919 aa13.92□□□□□ -0.18
CLN3-248ENST00000636355 APAF1O14727 1248 aa13.92□□□□□ -0.18
CLN3-248ENST00000636355 NEFLP07196 543 aa13.92□□□□□ -0.18
CLN3-248ENST00000636355 NEFMP07197 916 aa13.92□□□□□ -0.18
CLN3-248ENST00000636355 PLEKHF1Q96S99 279 aa13.92□□□□□ -0.18
CLN3-248ENST00000636355 AHDC1Q5TGY3 1603 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms