RNA–Protein interactions for RNA: ENST00000635273.1

SMARCA2-238, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-238	ENST00000635273	BLOC1S3	Q6QNY0	202 aa		11.72	□□□□□ -0.53
SMARCA2-238	ENST00000635273	RNF19B	Q6ZMZ0	732 aa		11.72	□□□□□ -0.53
SMARCA2-238	ENST00000635273	PRKD2	Q9BZL6	878 aa		11.72	□□□□□ -0.53
SMARCA2-238	ENST00000635273	SRPK2	P78362	688 aa	Known RBP	11.71	□□□□□ -0.53
SMARCA2-238	ENST00000635273	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	PALM3	A6NDB9	673 aa	Predicted RBP	11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	PPP4C	P60510	307 aa		11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	BRICD5	Q6PL45	260 aa		11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	AEBP1	Q8IUX7	1158 aa		11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	USB1	Q9BQ65	265 aa	Known RBP	11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	WBP1L	Q9NX94	342 aa		11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	SALL2	Q9Y467	1007 aa	Predicted RBP	11.7	□□□□□ -0.54
SMARCA2-238	ENST00000635273	PNMA1	Q8ND90	353 aa		11.69	□□□□□ -0.54
SMARCA2-238	ENST00000635273	UCN2	Q96RP3	112 aa		11.69	□□□□□ -0.54
SMARCA2-238	ENST00000635273	APLP1	P51693	650 aa		11.68	□□□□□ -0.54
SMARCA2-238	ENST00000635273	PDE4C	Q08493	712 aa		11.68	□□□□□ -0.54
SMARCA2-238	ENST00000635273	SEMA3F	Q13275	785 aa		11.68	□□□□□ -0.54
SMARCA2-238	ENST00000635273	SCUBE3	Q8IX30	993 aa		11.68	□□□□□ -0.54
SMARCA2-238	ENST00000635273	HPS5	Q9UPZ3	1129 aa		11.68	□□□□□ -0.54
SMARCA2-238	ENST00000635273		V9GY48	417 aa	Predicted RBP	11.68	□□□□□ -0.54
SMARCA2-238	ENST00000635273	TFIP11	Q9UBB9	837 aa	Known RBP	11.67	□□□□□ -0.54
SMARCA2-238	ENST00000635273	LMOD1	P29536	600 aa	Predicted RBP	11.66	□□□□□ -0.54
SMARCA2-238	ENST00000635273	THAP11	Q96EK4	314 aa		11.66	□□□□□ -0.54
SMARCA2-238	ENST00000635273	TSR3	Q9UJK0	312 aa	Known RBP	11.66	□□□□□ -0.54
SMARCA2-238	ENST00000635273	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
SMARCA2-238	ENST00000635273	CCDC9	Q9Y3X0	531 aa	Known RBP	11.65	□□□□□ -0.54
SMARCA2-238	ENST00000635273	NR1I2	O75469	434 aa		11.64	□□□□□ -0.55
SMARCA2-238	ENST00000635273	FMNL1	O95466	1100 aa	Predicted RBP	11.64	□□□□□ -0.55
SMARCA2-238	ENST00000635273	NR1H3	Q13133	447 aa		11.64	□□□□□ -0.55
SMARCA2-238	ENST00000635273	PCDHB3	Q9Y5E6	796 aa		11.64	□□□□□ -0.55
SMARCA2-238	ENST00000635273	F12	P00748	615 aa	Predicted RBP	11.63	□□□□□ -0.55
SMARCA2-238	ENST00000635273	FBXO45	P0C2W1	286 aa		11.62	□□□□□ -0.55
SMARCA2-238	ENST00000635273	FKBPL	Q9UIM3	349 aa		11.62	□□□□□ -0.55
SMARCA2-238	ENST00000635273	PDZRN3	Q9UPQ7	1066 aa		11.62	□□□□□ -0.55
SMARCA2-238	ENST00000635273	CSB-PGBD3	P0DP91	1061 aa		11.61	□□□□□ -0.55
SMARCA2-238	ENST00000635273	JUND	P17535	347 aa		11.61	□□□□□ -0.55
SMARCA2-238	ENST00000635273	PTPRN	Q16849	979 aa		11.61	□□□□□ -0.55
SMARCA2-238	ENST00000635273	TBC1D9	Q6ZT07	1266 aa		11.61	□□□□□ -0.55
SMARCA2-238	ENST00000635273	UST	Q9Y2C2	406 aa		11.61	□□□□□ -0.55
SMARCA2-238	ENST00000635273	MAFB	Q9Y5Q3	323 aa	Predicted RBP	11.61	□□□□□ -0.55
SMARCA2-238	ENST00000635273	ZBBX	A8MT70	800 aa		11.6	□□□□□ -0.55
SMARCA2-238	ENST00000635273	MAP10	Q9P2G4	905 aa		11.6	□□□□□ -0.55
SMARCA2-238	ENST00000635273	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.58	□□□□□ -0.56
SMARCA2-238	ENST00000635273	ATP9B	O43861	1147 aa		11.57	□□□□□ -0.56
SMARCA2-238	ENST00000635273	CDCA8	Q53HL2	280 aa		11.57	□□□□□ -0.56
SMARCA2-238	ENST00000635273	ATG7	O95352	703 aa		11.56	□□□□□ -0.56
SMARCA2-238	ENST00000635273	CTH	P32929	405 aa		11.56	□□□□□ -0.56
SMARCA2-238	ENST00000635273	MSS51	Q4VC12	460 aa		11.55	□□□□□ -0.56
SMARCA2-238	ENST00000635273	FAM160A2	Q8N612	972 aa	Predicted RBP	11.55	□□□□□ -0.56
SMARCA2-238	ENST00000635273	CARNS1	A5YM72	827 aa		11.54	□□□□□ -0.56
SMARCA2-238	ENST00000635273	DXO	O77932	396 aa	Known RBP	11.54	□□□□□ -0.56
SMARCA2-238	ENST00000635273	EVA1B	Q9NVM1	165 aa		11.54	□□□□□ -0.56
SMARCA2-238	ENST00000635273	PIK3CD	O00329	1044 aa		11.53	□□□□□ -0.56
SMARCA2-238	ENST00000635273	BRD1	O95696	1058 aa		11.53	□□□□□ -0.56
SMARCA2-238	ENST00000635273	CCNYL3	P0C7X3	344 aa		11.53	□□□□□ -0.56
SMARCA2-238	ENST00000635273	SPSB2	Q99619	263 aa		11.53	□□□□□ -0.56
SMARCA2-238	ENST00000635273	GZF1	Q9H116	711 aa	Predicted RBP	11.53	□□□□□ -0.56
SMARCA2-238	ENST00000635273	NPM2	Q86SE8	214 aa	Known RBP	11.52	□□□□□ -0.57
SMARCA2-238	ENST00000635273	NFATC2IP	Q8NCF5	419 aa		11.52	□□□□□ -0.57
SMARCA2-238	ENST00000635273	MMP16	P51512	607 aa		11.51	□□□□□ -0.57
SMARCA2-238	ENST00000635273	KCNH2	Q12809	1159 aa		11.51	□□□□□ -0.57
SMARCA2-238	ENST00000635273	KANK4	Q5T7N3	995 aa	Predicted RBP	11.51	□□□□□ -0.57
SMARCA2-238	ENST00000635273	NUDT12	Q9BQG2	462 aa		11.51	□□□□□ -0.57
SMARCA2-238	ENST00000635273	PATL2	C9JE40	543 aa	Known RBP	11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	COPS2	P61201	443 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	KCNA1	Q09470	495 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	PPP1R18	Q6NYC8	613 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	PDXDC2P	Q6P474	469 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	ARMC2	Q8NEN0	867 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	VRTN	Q9H8Y1	702 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	GPSM3	Q9Y4H4	160 aa		11.5	□□□□□ -0.57
SMARCA2-238	ENST00000635273	TMEM88B	A6NKF7	163 aa		11.49	□□□□□ -0.57
SMARCA2-238	ENST00000635273	PTK2	Q05397	1052 aa		11.49	□□□□□ -0.57
SMARCA2-238	ENST00000635273	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.49	□□□□□ -0.57
SMARCA2-238	ENST00000635273	PRDM9	Q9NQV7	894 aa		11.49	□□□□□ -0.57
SMARCA2-238	ENST00000635273	RANGAP1	P46060	587 aa	Predicted RBP	11.48	□□□□□ -0.57
SMARCA2-238	ENST00000635273	OCSTAMP	Q9BR26	566 aa		11.48	□□□□□ -0.57
SMARCA2-238	ENST00000635273	SKI	P12755	728 aa		11.47	□□□□□ -0.57
SMARCA2-238	ENST00000635273	TMCO4	Q5TGY1	634 aa		11.47	□□□□□ -0.57
SMARCA2-238	ENST00000635273	FAM174A	Q8TBP5	190 aa		11.47	□□□□□ -0.57
SMARCA2-238	ENST00000635273	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.47	□□□□□ -0.57
SMARCA2-238	ENST00000635273	USP17L3	A6NCW0	530 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	USP17L4	A6NCW7	530 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	USP17L2	Q6R6M4	530 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	USP17L1	Q7RTZ2	530 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	PLEKHM2	Q8IWE5	1019 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	IL21	Q9HBE4	155 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	CEP126	Q9P2H0	1117 aa		11.46	□□□□□ -0.57
SMARCA2-238	ENST00000635273	USP17L5	A8MUK1	530 aa		11.45	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ELOA	Q14241	798 aa	Known RBP	11.45	□□□□□ -0.58
SMARCA2-238	ENST00000635273	TJAP1	Q5JTD0	557 aa		11.45	□□□□□ -0.58
SMARCA2-238	ENST00000635273	NBPF14	Q5TI25	921 aa		11.45	□□□□□ -0.58
SMARCA2-238	ENST00000635273	MCCD1	P59942	119 aa	Predicted RBP	11.44	□□□□□ -0.58
SMARCA2-238	ENST00000635273	TREML4	Q6UXN2	200 aa		11.44	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ZNF592	Q92610	1267 aa		11.44	□□□□□ -0.58
SMARCA2-238	ENST00000635273	TLL1	O43897	1013 aa		11.43	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ZPR1	O75312	459 aa		11.43	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ADH1B	P00325	375 aa		11.43	□□□□□ -0.58
SMARCA2-238	ENST00000635273	GGCX	P38435	758 aa		11.43	□□□□□ -0.58
SMARCA2-238	ENST00000635273	PKDCC	Q504Y2	493 aa		11.43	□□□□□ -0.58

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