RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 FAM83GA6ND36 823 aa17.93■□□□□ 0.46
PNKP-217ENST00000625216 CABP2Q9NPB3 220 aa17.93■□□□□ 0.46
PNKP-217ENST00000625216 VPS72Q15906 364 aa17.92■□□□□ 0.46
PNKP-217ENST00000625216 TIMELESSQ9UNS1 1208 aa17.92■□□□□ 0.46
PNKP-217ENST00000625216 BRD4O60885 1362 aaPredicted RBP17.91■□□□□ 0.46
PNKP-217ENST00000625216 TRPM3Q9HCF6 1732 aaPredicted RBP17.91■□□□□ 0.46
PNKP-217ENST00000625216 MARF1Q9Y4F3 1742 aaKnown RBP17.91■□□□□ 0.46
PNKP-217ENST00000625216 TRPM1Q7Z4N2 1603 aa17.9■□□□□ 0.46
PNKP-217ENST00000625216 ITSN1Q15811 1721 aa17.9■□□□□ 0.46
PNKP-217ENST00000625216 CARD11Q9BXL7 1154 aa17.9■□□□□ 0.46
PNKP-217ENST00000625216 PPIP5K1Q6PFW1 1433 aa17.89■□□□□ 0.46
PNKP-217ENST00000625216 CABP1Q9NZU7 370 aa17.89■□□□□ 0.45
PNKP-217ENST00000625216 ALS2Q96Q42 1657 aa17.88■□□□□ 0.45
PNKP-217ENST00000625216 ATAD2Q6PL18 1390 aa17.88■□□□□ 0.45
PNKP-217ENST00000625216 ONECUT3O60422 494 aaPredicted RBP17.87■□□□□ 0.45
PNKP-217ENST00000625216 ABTB2Q8N961 1025 aa17.87■□□□□ 0.45
PNKP-217ENST00000625216 BTG4Q9NY30 223 aa17.87■□□□□ 0.45
PNKP-217ENST00000625216 RALGAPBQ86X10 1494 aa17.87■□□□□ 0.45
PNKP-217ENST00000625216 NLRP13Q86W25 1043 aa17.86■□□□□ 0.45
PNKP-217ENST00000625216 ZNF692Q9BU19 519 aaPredicted RBP17.86■□□□□ 0.45
PNKP-217ENST00000625216 PRDM11Q9NQV5 511 aa17.86■□□□□ 0.45
PNKP-217ENST00000625216 CCDC9Q9Y3X0 531 aaKnown RBP17.86■□□□□ 0.45
PNKP-217ENST00000625216 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.86■□□□□ 0.45
PNKP-217ENST00000625216 TOPAZ1Q8N9V7 1692 aa17.85■□□□□ 0.45
PNKP-217ENST00000625216 SBNO2Q9Y2G9 1366 aa17.85■□□□□ 0.45
PNKP-217ENST00000625216 NUTM2GQ5VZR2 741 aa17.84■□□□□ 0.45
PNKP-217ENST00000625216 QRICH2Q9H0J4 1663 aa17.83■□□□□ 0.45
PNKP-217ENST00000625216 CCDC125Q86Z20 511 aa17.83■□□□□ 0.44
PNKP-217ENST00000625216 ABCA3Q99758 1704 aa17.82■□□□□ 0.44
PNKP-217ENST00000625216 NWD2Q9ULI1 1742 aa17.82■□□□□ 0.44
PNKP-217ENST00000625216 SLC24A1O60721 1099 aa17.82■□□□□ 0.44
PNKP-217ENST00000625216 SEPT12Q8IYM1 358 aa17.82■□□□□ 0.44
PNKP-217ENST00000625216 KIAA0232Q92628 1395 aa17.81■□□□□ 0.44
PNKP-217ENST00000625216 USP19O94966 1318 aa17.81■□□□□ 0.44
PNKP-217ENST00000625216 ZC3H6P61129 1189 aaKnown RBP17.81■□□□□ 0.44
PNKP-217ENST00000625216 USP6P35125 1406 aa17.81■□□□□ 0.44
PNKP-217ENST00000625216 GLI3P10071 1580 aa17.8■□□□□ 0.44
PNKP-217ENST00000625216 GCP02774 474 aa17.8■□□□□ 0.44
PNKP-217ENST00000625216 PUS7Q96PZ0 661 aaKnown RBP17.8■□□□□ 0.44
PNKP-217ENST00000625216 COL14A1Q05707 1796 aaKnown RBP17.79■□□□□ 0.44
PNKP-217ENST00000625216 NLRP6P59044 892 aa17.79■□□□□ 0.44
PNKP-217ENST00000625216 CPDO75976 1380 aa17.79■□□□□ 0.44
PNKP-217ENST00000625216 SPATA31A5Q5VU36 1347 aa17.78■□□□□ 0.44
PNKP-217ENST00000625216 SPATA31A7Q8IWB4 1347 aa17.78■□□□□ 0.44
PNKP-217ENST00000625216 CHRNA2Q15822 529 aa17.78■□□□□ 0.44
PNKP-217ENST00000625216 SSH2Q76I76 1423 aa17.78■□□□□ 0.44
PNKP-217ENST00000625216 PLCH1Q4KWH8 1693 aa17.77■□□□□ 0.44
PNKP-217ENST00000625216 TTC21BQ7Z4L5 1316 aa17.76■□□□□ 0.43
PNKP-217ENST00000625216 EVA1CP58658 441 aa17.76■□□□□ 0.43
PNKP-217ENST00000625216 FAM98CQ17RN3 349 aaKnown RBP17.76■□□□□ 0.43
PNKP-217ENST00000625216 KRT27Q7Z3Y8 459 aa17.76■□□□□ 0.43
PNKP-217ENST00000625216 CRYBG1Q9Y4K1 1723 aa17.75■□□□□ 0.43
PNKP-217ENST00000625216 TTC21AQ8NDW8 1320 aa17.75■□□□□ 0.43
PNKP-217ENST00000625216 CPSF1Q10570 1443 aaKnown RBP17.75■□□□□ 0.43
PNKP-217ENST00000625216 A0A0G2JS52 829 aa17.74■□□□□ 0.43
PNKP-217ENST00000625216 MYT1Q01538 1121 aa17.74■□□□□ 0.43
PNKP-217ENST00000625216 STRN4Q9NRL3 753 aa17.74■□□□□ 0.43
PNKP-217ENST00000625216 SPATA31A1Q5TZJ5 1347 aa17.73■□□□□ 0.43
PNKP-217ENST00000625216 KCNH5Q8NCM2 988 aa17.73■□□□□ 0.43
PNKP-217ENST00000625216 KTN1Q86UP2 1357 aaKnown RBP17.73■□□□□ 0.43
PNKP-217ENST00000625216 ST20-MTHFSA0A0A6YYL1 179 aa17.72■□□□□ 0.43
PNKP-217ENST00000625216 TESK2Q96S53 571 aa17.72■□□□□ 0.43
PNKP-217ENST00000625216 NRAPQ86VF7 1730 aa17.72■□□□□ 0.43
PNKP-217ENST00000625216 PHRF1Q9P1Y6 1649 aaKnown RBP17.72■□□□□ 0.43
PNKP-217ENST00000625216 HDGFL2Q7Z4V5 671 aaPredicted RBP17.71■□□□□ 0.43
PNKP-217ENST00000625216 TMC1Q8TDI8 760 aa17.71■□□□□ 0.43
PNKP-217ENST00000625216 EP400Q96L91 3159 aa17.71■□□□□ 0.42
PNKP-217ENST00000625216 AATKQ6ZMQ8 1374 aa17.7■□□□□ 0.42
PNKP-217ENST00000625216 SLC12A5Q9H2X9 1139 aa17.7■□□□□ 0.42
PNKP-217ENST00000625216 TERF2IPQ9NYB0 399 aa17.7■□□□□ 0.42
PNKP-217ENST00000625216 BLMP54132 1417 aaPredicted RBP17.7■□□□□ 0.42
PNKP-217ENST00000625216 NRKQ7Z2Y5 1582 aa17.7■□□□□ 0.42
PNKP-217ENST00000625216 SF3B2Q13435 895 aaKnown RBP17.69■□□□□ 0.42
PNKP-217ENST00000625216 BARGINQ6ZT62 677 aa17.69■□□□□ 0.42
PNKP-217ENST00000625216 THRAP3Q9Y2W1 955 aaKnown RBP17.69■□□□□ 0.42
PNKP-217ENST00000625216 LARP1Q6PKG0 1096 aaKnown RBP17.68■□□□□ 0.42
PNKP-217ENST00000625216 CAMTA1Q9Y6Y1 1673 aa17.67■□□□□ 0.42
PNKP-217ENST00000625216 SLIT3O75094 1523 aa17.67■□□□□ 0.42
PNKP-217ENST00000625216 NINLQ9Y2I6 1382 aa17.67■□□□□ 0.42
PNKP-217ENST00000625216 ARHGEF25Q86VW2 580 aa17.67■□□□□ 0.42
PNKP-217ENST00000625216 TCP11L2Q8N4U5 519 aa17.67■□□□□ 0.42
PNKP-217ENST00000625216 USP35Q9P2H5 1018 aa17.66■□□□□ 0.42
PNKP-217ENST00000625216 USP31Q70CQ4 1352 aa17.66■□□□□ 0.42
PNKP-217ENST00000625216 ZBTB7CA1YPR0 619 aa17.65■□□□□ 0.42
PNKP-217ENST00000625216 TMF1P82094 1093 aa17.65■□□□□ 0.42
PNKP-217ENST00000625216 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.65■□□□□ 0.42
PNKP-217ENST00000625216 CD163L1Q9NR16 1453 aa17.64■□□□□ 0.41
PNKP-217ENST00000625216 USP47Q96K76 1375 aa17.64■□□□□ 0.41
PNKP-217ENST00000625216 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
PNKP-217ENST00000625216 ZRANB1Q9UGI0 708 aa17.63■□□□□ 0.41
PNKP-217ENST00000625216 PIK3C2AO00443 1686 aa17.63■□□□□ 0.41
PNKP-217ENST00000625216 LMO7Q8WWI1 1683 aa17.63■□□□□ 0.41
PNKP-217ENST00000625216 EDC4Q6P2E9 1401 aaKnown RBP17.63■□□□□ 0.41
PNKP-217ENST00000625216 COL5A2P05997 1499 aaPredicted RBP17.63■□□□□ 0.41
PNKP-217ENST00000625216 AKAP12Q02952 1782 aa17.62■□□□□ 0.41
PNKP-217ENST00000625216 PDE3BQ13370 1112 aa17.62■□□□□ 0.41
PNKP-217ENST00000625216 FAM196AQ6ZSG2 479 aa17.62■□□□□ 0.41
PNKP-217ENST00000625216 AXIN2Q9Y2T1 843 aa17.62■□□□□ 0.41
PNKP-217ENST00000625216 BRWD3Q6RI45 1802 aa17.62■□□□□ 0.41
PNKP-217ENST00000625216 CRB1P82279 1406 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms