RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 PSME1Q06323 249 aa24.2■■□□□ 1.46
PTCHD3-202ENST00000622555 GGNBP2Q9H3C7 697 aa24.2■■□□□ 1.46
PTCHD3-202ENST00000622555 SSH2Q76I76 1423 aa24.2■■□□□ 1.46
PTCHD3-202ENST00000622555 MORC1Q86VD1 984 aa24.18■■□□□ 1.46
PTCHD3-202ENST00000622555 NME9Q86XW9 330 aa24.18■■□□□ 1.46
PTCHD3-202ENST00000622555 BRINP3Q76B58 766 aa24.17■■□□□ 1.46
PTCHD3-202ENST00000622555 TTC21AQ8NDW8 1320 aa24.17■■□□□ 1.46
PTCHD3-202ENST00000622555 MYBBP1AQ9BQG0 1328 aaKnown RBP24.17■■□□□ 1.46
PTCHD3-202ENST00000622555 BRD4O60885 1362 aaPredicted RBP24.17■■□□□ 1.46
PTCHD3-202ENST00000622555 CCER2I3L3R5 266 aa24.15■■□□□ 1.46
PTCHD3-202ENST00000622555 PAK3O75914 559 aaPredicted RBP24.15■■□□□ 1.46
PTCHD3-202ENST00000622555 XPCQ01831 940 aaPredicted RBP24.15■■□□□ 1.46
PTCHD3-202ENST00000622555 PIK3C2AO00443 1686 aa24.14■■□□□ 1.45
PTCHD3-202ENST00000622555 NPHP3Q7Z494 1330 aa24.13■■□□□ 1.45
PTCHD3-202ENST00000622555 TRPM3Q9HCF6 1732 aaPredicted RBP24.13■■□□□ 1.45
PTCHD3-202ENST00000622555 KRT28Q7Z3Y7 464 aa24.13■■□□□ 1.45
PTCHD3-202ENST00000622555 ZRANB1Q9UGI0 708 aa24.13■■□□□ 1.45
PTCHD3-202ENST00000622555 TNNT2P45379 298 aaPredicted RBP24.12■■□□□ 1.45
PTCHD3-202ENST00000622555 DDX17Q92841 729 aaKnown RBP24.12■■□□□ 1.45
PTCHD3-202ENST00000622555 COG3Q96JB2 828 aa24.11■■□□□ 1.45
PTCHD3-202ENST00000622555 IQSEC2Q5JU85 1478 aa24.11■■□□□ 1.45
PTCHD3-202ENST00000622555 PPP2R1AP30153 589 aa24.1■■□□□ 1.45
PTCHD3-202ENST00000622555 ROBO1Q9Y6N7 1651 aa24.1■■□□□ 1.45
PTCHD3-202ENST00000622555 NLRP13Q86W25 1043 aa24.09■■□□□ 1.45
PTCHD3-202ENST00000622555 ABTB2Q8N961 1025 aa24.09■■□□□ 1.45
PTCHD3-202ENST00000622555 OVOS2A0A0J9YW53 1432 aa24.08■■□□□ 1.45
PTCHD3-202ENST00000622555 OVOS2Q6IE36 1432 aa24.08■■□□□ 1.45
PTCHD3-202ENST00000622555 PXDNQ92626 1479 aa24.07■■□□□ 1.44
PTCHD3-202ENST00000622555 NHSL1Q5SYE7 1610 aa24.07■■□□□ 1.44
PTCHD3-202ENST00000622555 TOM1O60784 492 aa24.07■■□□□ 1.44
PTCHD3-202ENST00000622555 CCDC184Q52MB2 194 aa24.07■■□□□ 1.44
PTCHD3-202ENST00000622555 CERKQ8TCT0 537 aa24.07■■□□□ 1.44
PTCHD3-202ENST00000622555 MRS2Q9HD23 443 aa24.07■■□□□ 1.44
PTCHD3-202ENST00000622555 USP31Q70CQ4 1352 aa24.06■■□□□ 1.44
PTCHD3-202ENST00000622555 USP54Q70EL1 1684 aa24.06■■□□□ 1.44
PTCHD3-202ENST00000622555 MARF1Q9Y4F3 1742 aaKnown RBP24.06■■□□□ 1.44
PTCHD3-202ENST00000622555 NLRP6P59044 892 aa24.06■■□□□ 1.44
PTCHD3-202ENST00000622555 NUTM2GQ5VZR2 741 aa24.06■■□□□ 1.44
PTCHD3-202ENST00000622555 ALS2Q96Q42 1657 aa24.05■■□□□ 1.44
PTCHD3-202ENST00000622555 SBNO1A3KN83 1393 aa24.04■■□□□ 1.44
PTCHD3-202ENST00000622555 MAP2P11137 1827 aaKnown RBP24.04■■□□□ 1.44
PTCHD3-202ENST00000622555 LMOD2Q6P5Q4 547 aa24.04■■□□□ 1.44
PTCHD3-202ENST00000622555 SCAF1Q9H7N4 1312 aaKnown RBP24.03■■□□□ 1.44
PTCHD3-202ENST00000622555 UBAP1LF5GYI3 381 aa24.03■■□□□ 1.44
PTCHD3-202ENST00000622555 TNS3Q68CZ2 1445 aa24.01■■□□□ 1.43
PTCHD3-202ENST00000622555 SOS2Q07890 1332 aaPredicted RBP24■■□□□ 1.43
PTCHD3-202ENST00000622555 PIP4K2BP78356 416 aa23.99■■□□□ 1.43
PTCHD3-202ENST00000622555 AHDC1Q5TGY3 1603 aaPredicted RBP23.99■■□□□ 1.43
PTCHD3-202ENST00000622555 FBLN1P23142 703 aa23.98■■□□□ 1.43
PTCHD3-202ENST00000622555 SPATA31A3Q5VYP0 1347 aa23.98■■□□□ 1.43
PTCHD3-202ENST00000622555 AATKQ6ZMQ8 1374 aa23.98■■□□□ 1.43
PTCHD3-202ENST00000622555 SOX12O15370 315 aa23.98■■□□□ 1.43
PTCHD3-202ENST00000622555 MTHFSP49914 203 aa23.98■■□□□ 1.43
PTCHD3-202ENST00000622555 ARHGEF10O15013 1369 aa23.95■■□□□ 1.43
PTCHD3-202ENST00000622555 POLKQ9UBT6 870 aa23.95■■□□□ 1.42
PTCHD3-202ENST00000622555 PLEKHG5O94827 1062 aa23.94■■□□□ 1.42
PTCHD3-202ENST00000622555 RRS1Q15050 365 aaKnown RBP23.94■■□□□ 1.42
PTCHD3-202ENST00000622555 PHLPP1O60346 1717 aa23.94■■□□□ 1.42
PTCHD3-202ENST00000622555 SLIT3O75094 1523 aa23.93■■□□□ 1.42
PTCHD3-202ENST00000622555 USP19O94966 1318 aa23.93■■□□□ 1.42
PTCHD3-202ENST00000622555 PPM1GO15355 546 aaPredicted RBP23.93■■□□□ 1.42
PTCHD3-202ENST00000622555 CFAP53Q96M91 514 aa23.93■■□□□ 1.42
PTCHD3-202ENST00000622555 EMILIN1Q9Y6C2 1016 aa23.93■■□□□ 1.42
PTCHD3-202ENST00000622555 SMG6Q86US8 1419 aaKnown RBP23.91■■□□□ 1.42
PTCHD3-202ENST00000622555 MED1Q15648 1581 aaPredicted RBP23.91■■□□□ 1.42
PTCHD3-202ENST00000622555 FAM9BQ8IZU0 186 aa23.9■■□□□ 1.42
PTCHD3-202ENST00000622555 KCNH5Q8NCM2 988 aa23.9■■□□□ 1.42
PTCHD3-202ENST00000622555 NFAT5O94916 1531 aa23.9■■□□□ 1.42
PTCHD3-202ENST00000622555 PHRF1Q9P1Y6 1649 aaKnown RBP23.9■■□□□ 1.42
PTCHD3-202ENST00000622555 LTN1O94822 1766 aa23.9■■□□□ 1.42
PTCHD3-202ENST00000622555 PNISRQ8TF01 805 aaKnown RBP23.9■■□□□ 1.42
PTCHD3-202ENST00000622555 CRYBG1Q9Y4K1 1723 aa23.89■■□□□ 1.41
PTCHD3-202ENST00000622555 CDK12Q9NYV4 1490 aaPredicted RBP23.88■■□□□ 1.41
PTCHD3-202ENST00000622555 PEAK1Q9H792 1746 aa23.88■■□□□ 1.41
PTCHD3-202ENST00000622555 MAP3K19Q56UN5 1328 aa23.88■■□□□ 1.41
PTCHD3-202ENST00000622555 COL16A1Q07092 1604 aaPredicted RBP23.88■■□□□ 1.41
PTCHD3-202ENST00000622555 GCP02774 474 aa23.87■■□□□ 1.41
PTCHD3-202ENST00000622555 LRRC59Q96AG4 307 aaKnown RBP23.87■■□□□ 1.41
PTCHD3-202ENST00000622555 SHPRHQ149N8 1683 aa23.86■■□□□ 1.41
PTCHD3-202ENST00000622555 COL3A1P02461 1466 aaPredicted RBP23.86■■□□□ 1.41
PTCHD3-202ENST00000622555 CABLES1Q8TDN4 633 aa23.85■■□□□ 1.41
PTCHD3-202ENST00000622555 PNPLA6Q8IY17 1366 aa23.85■■□□□ 1.41
PTCHD3-202ENST00000622555 ABCA3Q99758 1704 aa23.84■■□□□ 1.41
PTCHD3-202ENST00000622555 INSRP06213 1382 aa23.84■■□□□ 1.41
PTCHD3-202ENST00000622555 AMPHP49418 695 aa23.84■■□□□ 1.41
PTCHD3-202ENST00000622555 WDR43Q15061 677 aaKnown RBP eCLIP23.84■■□□□ 1.41
PTCHD3-202ENST00000622555 FLT4P35916 1363 aa23.82■■□□□ 1.4
PTCHD3-202ENST00000622555 ZBTB7CA1YPR0 619 aa23.82■■□□□ 1.4
PTCHD3-202ENST00000622555 YTHDC1Q96MU7 727 aaKnown RBP23.82■■□□□ 1.4
PTCHD3-202ENST00000622555 KIF24Q5T7B8 1368 aa23.81■■□□□ 1.4
PTCHD3-202ENST00000622555 DIAPH1O60610 1272 aaKnown RBP23.81■■□□□ 1.4
PTCHD3-202ENST00000622555 RTL1A6NKG5 1358 aa23.8■■□□□ 1.4
PTCHD3-202ENST00000622555 COL22A1Q8NFW1 1626 aaPredicted RBP23.79■■□□□ 1.4
PTCHD3-202ENST00000622555 HAP1P54257 671 aaPredicted RBP23.79■■□□□ 1.4
PTCHD3-202ENST00000622555 ZC3H6P61129 1189 aaKnown RBP23.79■■□□□ 1.4
PTCHD3-202ENST00000622555 ARHGEF25Q86VW2 580 aa23.79■■□□□ 1.4
PTCHD3-202ENST00000622555 NUDCQ9Y266 331 aa23.79■■□□□ 1.4
PTCHD3-202ENST00000622555 HOXC9P31274 260 aa23.78■■□□□ 1.4
PTCHD3-202ENST00000622555 HSP90AB2PQ58FF8 381 aa23.78■■□□□ 1.4
PTCHD3-202ENST00000622555 CENPBP07199 599 aaPredicted RBP23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms