RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 STRN4Q9NRL3 753 aa18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 TEFQ10587 303 aa18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 PDCL2Q8N4E4 241 aa18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 NEUROD6Q96NK8 337 aa18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 INCENPQ9NQS7 918 aa18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 LRRFIP2Q9Y608 721 aaKnown RBP18.22■□□□□ 0.51
PDLIM2-220ENST00000622226 PAF1Q8N7H5 531 aa18.21■□□□□ 0.51
PDLIM2-220ENST00000622226 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.21■□□□□ 0.51
PDLIM2-220ENST00000622226 CGNQ9P2M7 1197 aaKnown RBP18.21■□□□□ 0.51
PDLIM2-220ENST00000622226 MINK1Q8N4C8 1332 aaPredicted RBP18.21■□□□□ 0.51
PDLIM2-220ENST00000622226 ZHX1Q9UKY1 873 aaPredicted RBP18.21■□□□□ 0.51
PDLIM2-220ENST00000622226 LRRCC1Q9C099 1032 aa18.21■□□□□ 0.51
PDLIM2-220ENST00000622226 FHAD1B1AJZ9 1412 aa18.2■□□□□ 0.5
PDLIM2-220ENST00000622226 RIPK4P57078 832 aa18.2■□□□□ 0.5
PDLIM2-220ENST00000622226 ESPNB1AK53 854 aa18.2■□□□□ 0.5
PDLIM2-220ENST00000622226 ERLIN1O75477 346 aa18.2■□□□□ 0.5
PDLIM2-220ENST00000622226 BRMS1Q9HCU9 246 aa18.19■□□□□ 0.5
PDLIM2-220ENST00000622226 GOLGA6L10A0A0M3HER8 536 aa18.18■□□□□ 0.5
PDLIM2-220ENST00000622226 API5Q9BZZ5 524 aaKnown RBP18.18■□□□□ 0.5
PDLIM2-220ENST00000622226 TNNT1P13805 278 aa18.18■□□□□ 0.5
PDLIM2-220ENST00000622226 PPFIBP1Q86W92 1011 aa18.18■□□□□ 0.5
PDLIM2-220ENST00000622226 ERC2O15083 957 aa18.17■□□□□ 0.5
PDLIM2-220ENST00000622226 SYCP1Q15431 976 aa18.17■□□□□ 0.5
PDLIM2-220ENST00000622226 JPH4Q96JJ6 628 aa18.17■□□□□ 0.5
PDLIM2-220ENST00000622226 NACADO15069 1562 aa18.17■□□□□ 0.5
PDLIM2-220ENST00000622226 ZNHIT6Q9NWK9 470 aaKnown RBP18.17■□□□□ 0.5
PDLIM2-220ENST00000622226 TNMDQ9H2S6 317 aa18.17■□□□□ 0.5
PDLIM2-220ENST00000622226 CCDC192P0DO97 292 aa18.16■□□□□ 0.5
PDLIM2-220ENST00000622226 STK3Q13188 491 aa18.16■□□□□ 0.5
PDLIM2-220ENST00000622226 RSPH4AQ5TD94 716 aa18.16■□□□□ 0.5
PDLIM2-220ENST00000622226 FILIP1Q7Z7B0 1213 aa18.16■□□□□ 0.5
PDLIM2-220ENST00000622226 STK38Q15208 465 aa18.16■□□□□ 0.5
PDLIM2-220ENST00000622226 TTC5Q8N0Z6 440 aa18.15■□□□□ 0.5
PDLIM2-220ENST00000622226 ZFP91Q96JP5 570 aaPredicted RBP18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 PSMA5P28066 241 aa18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 ZNF526Q8TF50 670 aaPredicted RBP18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 POLR3GO15318 223 aaPredicted RBP18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 XBP1P17861 261 aa18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 CCAR1Q8IX12 1150 aaKnown RBP18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 FSD1Q9BTV5 496 aa18.14■□□□□ 0.49
PDLIM2-220ENST00000622226 COG3Q96JB2 828 aa18.13■□□□□ 0.49
PDLIM2-220ENST00000622226 CDK5RAP3Q96JB5 506 aa18.13■□□□□ 0.49
PDLIM2-220ENST00000622226 TANGO6Q9C0B7 1094 aa18.13■□□□□ 0.49
PDLIM2-220ENST00000622226 NF2P35240 595 aa18.13■□□□□ 0.49
PDLIM2-220ENST00000622226 AIMP1Q12904 312 aaKnown RBP18.13■□□□□ 0.49
PDLIM2-220ENST00000622226 TMEM132AQ24JP5 1023 aa18.12■□□□□ 0.49
PDLIM2-220ENST00000622226 DNAJC2Q99543 621 aaKnown RBP18.12■□□□□ 0.49
PDLIM2-220ENST00000622226 ROCK1Q13464 1354 aa18.12■□□□□ 0.49
PDLIM2-220ENST00000622226 EZRP15311 586 aaKnown RBP18.12■□□□□ 0.49
PDLIM2-220ENST00000622226 TMCO3Q6UWJ1 677 aa18.12■□□□□ 0.49
PDLIM2-220ENST00000622226 ANKRD18AQ8IVF6 992 aa18.12■□□□□ 0.49
PDLIM2-220ENST00000622226 KRT18P05783 430 aaKnown RBP18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 IKQ13123 557 aaPredicted RBP18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 ME1P48163 572 aa18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 CNTROBQ8N137 903 aa18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 UBXN4Q92575 508 aa18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 RBM33Q96EV2 1170 aaKnown RBP18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 C1orf115Q9H7X2 142 aa18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 PDCL3Q9H2J4 239 aa18.11■□□□□ 0.49
PDLIM2-220ENST00000622226 ZHX3Q9H4I2 956 aa18.1■□□□□ 0.49
PDLIM2-220ENST00000622226 CCDC113Q9H0I3 377 aa18.1■□□□□ 0.49
PDLIM2-220ENST00000622226 CFAP45Q9UL16 551 aa18.1■□□□□ 0.49
PDLIM2-220ENST00000622226 PDZRN3Q9UPQ7 1066 aa18.1■□□□□ 0.49
PDLIM2-220ENST00000622226 SEPT11Q9NVA2 429 aaKnown RBP18.09■□□□□ 0.49
PDLIM2-220ENST00000622226 FMN1Q68DA7 1419 aa18.09■□□□□ 0.49
PDLIM2-220ENST00000622226 ZNF396Q96N95 335 aaPredicted RBP18.09■□□□□ 0.49
PDLIM2-220ENST00000622226 HMOX1P09601 288 aa18.09■□□□□ 0.49
PDLIM2-220ENST00000622226 NINLQ9Y2I6 1382 aa18.09■□□□□ 0.49
PDLIM2-220ENST00000622226 DDX58O95786 925 aaKnown RBP18.09■□□□□ 0.49
PDLIM2-220ENST00000622226 MAP2K1Q02750 393 aaPredicted RBP18.08■□□□□ 0.49
PDLIM2-220ENST00000622226 RNF187Q5TA31 235 aaPredicted RBP18.08■□□□□ 0.49
PDLIM2-220ENST00000622226 SHTN1A0MZ66 631 aa18.08■□□□□ 0.48
PDLIM2-220ENST00000622226 DIAPH1O60610 1272 aaKnown RBP18.08■□□□□ 0.48
PDLIM2-220ENST00000622226 GTF2F1P35269 517 aaKnown RBP eCLIP18.08■□□□□ 0.48
PDLIM2-220ENST00000622226 TXLNAP40222 546 aa18.08■□□□□ 0.48
PDLIM2-220ENST00000622226 TSPYL4Q9UJ04 414 aa18.08■□□□□ 0.48
PDLIM2-220ENST00000622226 RABEP1Q15276 862 aa18.07■□□□□ 0.48
PDLIM2-220ENST00000622226 ABCC8Q09428 1581 aa18.07■□□□□ 0.48
PDLIM2-220ENST00000622226 PAXIP1Q6ZW49 1069 aaPredicted RBP18.07■□□□□ 0.48
PDLIM2-220ENST00000622226 SPDYE4A6NLX3 237 aa18.07■□□□□ 0.48
PDLIM2-220ENST00000622226 CRACR2AQ9BSW2 395 aa18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 TMX1Q9H3N1 280 aa18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 PDCP20941 246 aa18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 XPCQ01831 940 aaPredicted RBP18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 HSP90AB4PQ58FF6 505 aa18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 ZMYND15Q9H091 742 aa18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 UBTFL1P0CB47 393 aaPredicted RBP18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 GBP2P32456 591 aaPredicted RBP18.06■□□□□ 0.48
PDLIM2-220ENST00000622226 RIC3Q7Z5B4 369 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 NLRP2Q9NX02 1062 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 KIF7Q2M1P5 1343 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 VPS8Q8N3P4 1428 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 MAP4K4O95819 1239 aaPredicted RBP18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 ESCO1Q5FWF5 840 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 CDCA7LQ96GN5 454 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 ANKRD30AQ9BXX3 1397 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 SYCE3A1L190 88 aa18.05■□□□□ 0.48
PDLIM2-220ENST00000622226 KIAA1328Q86T90 577 aa18.04■□□□□ 0.48
PDLIM2-220ENST00000622226 ZSCAN30Q86W11 494 aa18.04■□□□□ 0.48
PDLIM2-220ENST00000622226 RUNDC1Q96C34 613 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms