RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 NLRP13Q86W25 1043 aa14.45□□□□□ -0.1
CPNE3-212ENST00000621783 PHF8Q9UPP1 1060 aa14.45□□□□□ -0.1
CPNE3-212ENST00000621783 ATF3P18847 181 aa14.44□□□□□ -0.1
CPNE3-212ENST00000621783 PPP2R1AP30153 589 aa14.44□□□□□ -0.1
CPNE3-212ENST00000621783 MORC1Q86VD1 984 aa14.44□□□□□ -0.1
CPNE3-212ENST00000621783 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.44□□□□□ -0.1
CPNE3-212ENST00000621783 NGDNQ8NEJ9 315 aaKnown RBP14.44□□□□□ -0.1
CPNE3-212ENST00000621783 PIK3C2AO00443 1686 aa14.44□□□□□ -0.1
CPNE3-212ENST00000621783 TTC21BQ7Z4L5 1316 aa14.43□□□□□ -0.1
CPNE3-212ENST00000621783 FYB1O15117 783 aa14.43□□□□□ -0.1
CPNE3-212ENST00000621783 CADPS2Q86UW7 1296 aa14.43□□□□□ -0.1
CPNE3-212ENST00000621783 GGNBP2Q9H3C7 697 aa14.43□□□□□ -0.1
CPNE3-212ENST00000621783 USP54Q70EL1 1684 aa14.42□□□□□ -0.1
CPNE3-212ENST00000621783 ESCO1Q5FWF5 840 aa14.42□□□□□ -0.1
CPNE3-212ENST00000621783 NME9Q86XW9 330 aa14.42□□□□□ -0.1
CPNE3-212ENST00000621783 OVOS2A0A0J9YW53 1432 aa14.41□□□□□ -0.1
CPNE3-212ENST00000621783 OVOS2Q6IE36 1432 aa14.41□□□□□ -0.1
CPNE3-212ENST00000621783 ORAI2Q96SN7 254 aa14.41□□□□□ -0.1
CPNE3-212ENST00000621783 TRPM3Q9HCF6 1732 aaPredicted RBP14.41□□□□□ -0.1
CPNE3-212ENST00000621783 TTC21AQ8NDW8 1320 aa14.41□□□□□ -0.1
CPNE3-212ENST00000621783 MARF1Q9Y4F3 1742 aaKnown RBP14.4□□□□□ -0.1
CPNE3-212ENST00000621783 YTHDC1Q96MU7 727 aaKnown RBP14.39□□□□□ -0.11
CPNE3-212ENST00000621783 TNNT2P45379 298 aaPredicted RBP14.38□□□□□ -0.11
CPNE3-212ENST00000621783 ZRANB1Q9UGI0 708 aa14.38□□□□□ -0.11
CPNE3-212ENST00000621783 SCAF1Q9H7N4 1312 aaKnown RBP14.37□□□□□ -0.11
CPNE3-212ENST00000621783 SHPRHQ149N8 1683 aa14.36□□□□□ -0.11
CPNE3-212ENST00000621783 USP31Q70CQ4 1352 aa14.36□□□□□ -0.11
CPNE3-212ENST00000621783 COG3Q96JB2 828 aa14.36□□□□□ -0.11
CPNE3-212ENST00000621783 SMG6Q86US8 1419 aaKnown RBP14.35□□□□□ -0.11
CPNE3-212ENST00000621783 PNISRQ8TF01 805 aaKnown RBP14.35□□□□□ -0.11
CPNE3-212ENST00000621783 ALS2Q96Q42 1657 aa14.35□□□□□ -0.11
CPNE3-212ENST00000621783 COL3A1P02461 1466 aaPredicted RBP14.34□□□□□ -0.11
CPNE3-212ENST00000621783 FOXO3O43524 673 aa14.34□□□□□ -0.11
CPNE3-212ENST00000621783 PSME1Q06323 249 aa14.34□□□□□ -0.11
CPNE3-212ENST00000621783 FAM9BQ8IZU0 186 aa14.34□□□□□ -0.11
CPNE3-212ENST00000621783 AATKQ6ZMQ8 1374 aa14.34□□□□□ -0.11
CPNE3-212ENST00000621783 NHSL1Q5SYE7 1610 aa14.33□□□□□ -0.11
CPNE3-212ENST00000621783 PXDNQ92626 1479 aa14.33□□□□□ -0.12
CPNE3-212ENST00000621783 BRINP3Q76B58 766 aa14.33□□□□□ -0.12
CPNE3-212ENST00000621783 CDK12Q9NYV4 1490 aaPredicted RBP14.32□□□□□ -0.12
CPNE3-212ENST00000621783 PAK3O75914 559 aaPredicted RBP14.32□□□□□ -0.12
CPNE3-212ENST00000621783 MTHFSP49914 203 aa14.32□□□□□ -0.12
CPNE3-212ENST00000621783 XPCQ01831 940 aaPredicted RBP14.32□□□□□ -0.12
CPNE3-212ENST00000621783 NPHP3Q7Z494 1330 aa14.32□□□□□ -0.12
CPNE3-212ENST00000621783 KRT28Q7Z3Y7 464 aa14.31□□□□□ -0.12
CPNE3-212ENST00000621783 SLAIN2Q9P270 581 aa14.31□□□□□ -0.12
CPNE3-212ENST00000621783 PEAK1Q9H792 1746 aa14.31□□□□□ -0.12
CPNE3-212ENST00000621783 MAP2P11137 1827 aaKnown RBP14.31□□□□□ -0.12
CPNE3-212ENST00000621783 SBNO1A3KN83 1393 aa14.31□□□□□ -0.12
CPNE3-212ENST00000621783 SLIT3O75094 1523 aa14.31□□□□□ -0.12
CPNE3-212ENST00000621783 ABTB2Q8N961 1025 aa14.3□□□□□ -0.12
CPNE3-212ENST00000621783 DDX17Q92841 729 aaKnown RBP14.3□□□□□ -0.12
CPNE3-212ENST00000621783 CFAP53Q96M91 514 aa14.3□□□□□ -0.12
CPNE3-212ENST00000621783 BLMP54132 1417 aaPredicted RBP14.3□□□□□ -0.12
CPNE3-212ENST00000621783 TNS3Q68CZ2 1445 aa14.3□□□□□ -0.12
CPNE3-212ENST00000621783 NFAT5O94916 1531 aa14.3□□□□□ -0.12
CPNE3-212ENST00000621783 ROBO1Q9Y6N7 1651 aa14.3□□□□□ -0.12
CPNE3-212ENST00000621783 FBLN1P23142 703 aa14.29□□□□□ -0.12
CPNE3-212ENST00000621783 NLRP6P59044 892 aa14.29□□□□□ -0.12
CPNE3-212ENST00000621783 NUTM2GQ5VZR2 741 aa14.29□□□□□ -0.12
CPNE3-212ENST00000621783 POLKQ9UBT6 870 aa14.29□□□□□ -0.12
CPNE3-212ENST00000621783 INSRP06213 1382 aa14.29□□□□□ -0.12
CPNE3-212ENST00000621783 WDR43Q15061 677 aaKnown RBP eCLIP14.28□□□□□ -0.12
CPNE3-212ENST00000621783 MED1Q15648 1581 aaPredicted RBP14.28□□□□□ -0.12
CPNE3-212ENST00000621783 PNPLA6Q8IY17 1366 aa14.28□□□□□ -0.12
CPNE3-212ENST00000621783 PHRF1Q9P1Y6 1649 aaKnown RBP14.28□□□□□ -0.12
CPNE3-212ENST00000621783 CRYBG1Q9Y4K1 1723 aa14.28□□□□□ -0.12
CPNE3-212ENST00000621783 EMILIN1Q9Y6C2 1016 aa14.28□□□□□ -0.12
CPNE3-212ENST00000621783 RRS1Q15050 365 aaKnown RBP14.27□□□□□ -0.13
CPNE3-212ENST00000621783 LTN1O94822 1766 aa14.27□□□□□ -0.13
CPNE3-212ENST00000621783 AHDC1Q5TGY3 1603 aaPredicted RBP14.26□□□□□ -0.13
CPNE3-212ENST00000621783 IQSEC2Q5JU85 1478 aa14.26□□□□□ -0.13
CPNE3-212ENST00000621783 USP19O94966 1318 aa14.26□□□□□ -0.13
CPNE3-212ENST00000621783 SOS2Q07890 1332 aaPredicted RBP14.25□□□□□ -0.13
CPNE3-212ENST00000621783 SOX12O15370 315 aa14.25□□□□□ -0.13
CPNE3-212ENST00000621783 HNRNPUQ00839 825 aaKnown RBP eCLIP14.25□□□□□ -0.13
CPNE3-212ENST00000621783 MAP3K19Q56UN5 1328 aa14.24□□□□□ -0.13
CPNE3-212ENST00000621783 SPATA31A3Q5VYP0 1347 aa14.24□□□□□ -0.13
CPNE3-212ENST00000621783 PPM1GO15355 546 aaPredicted RBP14.24□□□□□ -0.13
CPNE3-212ENST00000621783 ADAMTS8Q9UP79 889 aa14.24□□□□□ -0.13
CPNE3-212ENST00000621783 ABCA3Q99758 1704 aa14.24□□□□□ -0.13
CPNE3-212ENST00000621783 ARHGEF10O15013 1369 aa14.23□□□□□ -0.13
CPNE3-212ENST00000621783 LMOD2Q6P5Q4 547 aa14.23□□□□□ -0.13
CPNE3-212ENST00000621783 FLT4P35916 1363 aa14.22□□□□□ -0.13
CPNE3-212ENST00000621783 RTL1A6NKG5 1358 aa14.22□□□□□ -0.13
CPNE3-212ENST00000621783 KIF24Q5T7B8 1368 aa14.22□□□□□ -0.13
CPNE3-212ENST00000621783 DIAPH1O60610 1272 aaKnown RBP14.21□□□□□ -0.13
CPNE3-212ENST00000621783 KCNH5Q8NCM2 988 aa14.21□□□□□ -0.13
CPNE3-212ENST00000621783 RGPD1P0DJD0 1748 aa14.21□□□□□ -0.14
CPNE3-212ENST00000621783 CENPBP07199 599 aaPredicted RBP14.2□□□□□ -0.14
CPNE3-212ENST00000621783 NUDCQ9Y266 331 aa14.2□□□□□ -0.14
CPNE3-212ENST00000621783 COL16A1Q07092 1604 aaPredicted RBP14.19□□□□□ -0.14
CPNE3-212ENST00000621783 ZBED9Q6R2W3 1325 aa14.19□□□□□ -0.14
CPNE3-212ENST00000621783 PHLPP1O60346 1717 aa14.19□□□□□ -0.14
CPNE3-212ENST00000621783 U2SURPO15042 1029 aaKnown RBP14.18□□□□□ -0.14
CPNE3-212ENST00000621783 PLEKHG5O94827 1062 aa14.18□□□□□ -0.14
CPNE3-212ENST00000621783 GCP02774 474 aa14.18□□□□□ -0.14
CPNE3-212ENST00000621783 U2AF1L5P0DN76 240 aaPredicted RBP14.18□□□□□ -0.14
CPNE3-212ENST00000621783 IL13P35225 146 aa14.18□□□□□ -0.14
CPNE3-212ENST00000621783 AMPHP49418 695 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms