RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 DLC1Q96QB1 1528 aa11.54□□□□□ -0.56
CLK1-215ENST00000621181 PSDA5PKW4 1024 aaPredicted RBP11.53□□□□□ -0.56
CLK1-215ENST00000621181 TRAK1Q9UPV9 953 aa11.53□□□□□ -0.56
CLK1-215ENST00000621181 LRP5O75197 1615 aa11.53□□□□□ -0.56
CLK1-215ENST00000621181 HRCP23327 699 aa11.53□□□□□ -0.56
CLK1-215ENST00000621181 EIF3AQ14152 1382 aaKnown RBP11.52□□□□□ -0.56
CLK1-215ENST00000621181 MINK1Q8N4C8 1332 aaPredicted RBP11.52□□□□□ -0.56
CLK1-215ENST00000621181 ADGRB2O60241 1585 aa11.52□□□□□ -0.57
CLK1-215ENST00000621181 PAK3O75914 559 aaPredicted RBP11.52□□□□□ -0.57
CLK1-215ENST00000621181 NRAPQ86VF7 1730 aa11.52□□□□□ -0.57
CLK1-215ENST00000621181 FAM182BQ5T319 152 aa11.51□□□□□ -0.57
CLK1-215ENST00000621181 NGDNQ8NEJ9 315 aaKnown RBP11.51□□□□□ -0.57
CLK1-215ENST00000621181 COL14A1Q05707 1796 aaKnown RBP11.51□□□□□ -0.57
CLK1-215ENST00000621181 TRPM3Q9HCF6 1732 aaPredicted RBP11.51□□□□□ -0.57
CLK1-215ENST00000621181 EN1Q05925 392 aaPredicted RBP11.51□□□□□ -0.57
CLK1-215ENST00000621181 PRDM11Q9NQV5 511 aa11.51□□□□□ -0.57
CLK1-215ENST00000621181 ALS2Q96Q42 1657 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 TULP4Q9NRJ4 1543 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 KDM2AQ9Y2K7 1162 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 ADGRB1O14514 1584 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 SPATA31A5Q5VU36 1347 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 SPATA31A7Q8IWB4 1347 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 PRR36Q9H6K5 1346 aa11.5□□□□□ -0.57
CLK1-215ENST00000621181 WASLO00401 505 aaPredicted RBP11.49□□□□□ -0.57
CLK1-215ENST00000621181 DCAF11Q8TEB1 546 aa11.49□□□□□ -0.57
CLK1-215ENST00000621181 RGPD1P0DJD0 1748 aa11.48□□□□□ -0.57
CLK1-215ENST00000621181 R3HDM1Q15032 1099 aaKnown RBP11.47□□□□□ -0.57
CLK1-215ENST00000621181 STRN4Q9NRL3 753 aa11.47□□□□□ -0.57
CLK1-215ENST00000621181 SLC4A2P04920 1241 aa11.46□□□□□ -0.57
CLK1-215ENST00000621181 KIAA0232Q92628 1395 aa11.46□□□□□ -0.57
CLK1-215ENST00000621181 RAB3GAP2Q9H2M9 1393 aa11.46□□□□□ -0.57
CLK1-215ENST00000621181 CHRNA2Q15822 529 aa11.46□□□□□ -0.58
CLK1-215ENST00000621181 USP35Q9P2H5 1018 aa11.46□□□□□ -0.58
CLK1-215ENST00000621181 THSD7AQ9UPZ6 1657 aa11.45□□□□□ -0.58
CLK1-215ENST00000621181 DISP2A7MBM2 1401 aa11.45□□□□□ -0.58
CLK1-215ENST00000621181 FAM196AQ6ZSG2 479 aa11.45□□□□□ -0.58
CLK1-215ENST00000621181 SPATA31A1Q5TZJ5 1347 aa11.45□□□□□ -0.58
CLK1-215ENST00000621181 CRYBG1Q9Y4K1 1723 aa11.45□□□□□ -0.58
CLK1-215ENST00000621181 TRIM37O94972 964 aa11.44□□□□□ -0.58
CLK1-215ENST00000621181 ZC3H6P61129 1189 aaKnown RBP11.44□□□□□ -0.58
CLK1-215ENST00000621181 EZH2Q15910 746 aaKnown RBP11.44□□□□□ -0.58
CLK1-215ENST00000621181 ITSN1Q15811 1721 aa11.44□□□□□ -0.58
CLK1-215ENST00000621181 TNS1Q9HBL0 1735 aaKnown RBP11.44□□□□□ -0.58
CLK1-215ENST00000621181 NUTM2GQ5VZR2 741 aa11.44□□□□□ -0.58
CLK1-215ENST00000621181 NUDT16Q96DE0 195 aaKnown RBP11.44□□□□□ -0.58
CLK1-215ENST00000621181 STAC3Q96MF2 364 aa11.44□□□□□ -0.58
CLK1-215ENST00000621181 ATP7BP35670 1465 aa11.43□□□□□ -0.58
CLK1-215ENST00000621181 EVA1CP58658 441 aa11.43□□□□□ -0.58
CLK1-215ENST00000621181 PCGF6Q9BYE7 350 aa11.43□□□□□ -0.58
CLK1-215ENST00000621181 APBA3O96018 575 aa11.42□□□□□ -0.58
CLK1-215ENST00000621181 ARHGEF28Q8N1W1 1705 aaKnown RBP11.42□□□□□ -0.58
CLK1-215ENST00000621181 PDE3BQ13370 1112 aa11.42□□□□□ -0.58
CLK1-215ENST00000621181 CAMKK2Q96RR4 588 aa11.42□□□□□ -0.58
CLK1-215ENST00000621181 PHRF1Q9P1Y6 1649 aaKnown RBP11.41□□□□□ -0.58
CLK1-215ENST00000621181 CDK19Q9BWU1 502 aa11.41□□□□□ -0.58
CLK1-215ENST00000621181 PARD3Q8TEW0 1356 aa11.41□□□□□ -0.58
CLK1-215ENST00000621181 ACEP12821 1306 aa11.4□□□□□ -0.58
CLK1-215ENST00000621181 ABTB2Q8N961 1025 aa11.4□□□□□ -0.58
CLK1-215ENST00000621181 CCDC61Q9Y6R9 512 aa11.4□□□□□ -0.58
CLK1-215ENST00000621181 SSH2Q76I76 1423 aa11.4□□□□□ -0.59
CLK1-215ENST00000621181 BARGINQ6ZT62 677 aa11.39□□□□□ -0.59
CLK1-215ENST00000621181 POLR3AO14802 1390 aaPredicted RBP11.39□□□□□ -0.59
CLK1-215ENST00000621181 NBPF8Q3BBV2 869 aa11.39□□□□□ -0.59
CLK1-215ENST00000621181 LARP1Q6PKG0 1096 aaKnown RBP11.39□□□□□ -0.59
CLK1-215ENST00000621181 TCP11L2Q8N4U5 519 aa11.39□□□□□ -0.59
CLK1-215ENST00000621181 NBPF14Q5TI25 921 aa11.38□□□□□ -0.59
CLK1-215ENST00000621181 CAMTA1Q9Y6Y1 1673 aa11.37□□□□□ -0.59
CLK1-215ENST00000621181 NRKQ7Z2Y5 1582 aa11.37□□□□□ -0.59
CLK1-215ENST00000621181 TOPAZ1Q8N9V7 1692 aa11.36□□□□□ -0.59
CLK1-215ENST00000621181 CPDO75976 1380 aa11.36□□□□□ -0.59
CLK1-215ENST00000621181 PLEKHG3A1L390 1219 aa11.36□□□□□ -0.59
CLK1-215ENST00000621181 NLRP13Q86W25 1043 aa11.36□□□□□ -0.59
CLK1-215ENST00000621181 THRAP3Q9Y2W1 955 aaKnown RBP11.36□□□□□ -0.59
CLK1-215ENST00000621181 GCP02774 474 aa11.35□□□□□ -0.59
CLK1-215ENST00000621181 SRPK2P78362 688 aaKnown RBP11.35□□□□□ -0.59
CLK1-215ENST00000621181 USP19O94966 1318 aa11.35□□□□□ -0.59
CLK1-215ENST00000621181 ZBTB22O15209 634 aa11.35□□□□□ -0.59
CLK1-215ENST00000621181 PPP1R1BQ9UD71 204 aaPredicted RBP11.35□□□□□ -0.59
CLK1-215ENST00000621181 RREB1Q92766 1687 aa11.34□□□□□ -0.59
CLK1-215ENST00000621181 NUP188Q5SRE5 1749 aa11.34□□□□□ -0.59
CLK1-215ENST00000621181 ZBTB7CA1YPR0 619 aa11.34□□□□□ -0.59
CLK1-215ENST00000621181 LMO7Q8WWI1 1683 aa11.34□□□□□ -0.59
CLK1-215ENST00000621181 PPIP5K1Q6PFW1 1433 aa11.33□□□□□ -0.6
CLK1-215ENST00000621181 C11orf95C9JLR9 678 aaPredicted RBP11.33□□□□□ -0.6
CLK1-215ENST00000621181 YY1P25490 414 aa11.33□□□□□ -0.6
CLK1-215ENST00000621181 SPON1Q9HCB6 807 aa11.33□□□□□ -0.6
CLK1-215ENST00000621181 COL5A2P05997 1499 aaPredicted RBP11.33□□□□□ -0.6
CLK1-215ENST00000621181 RNF39Q9H2S5 420 aa11.32□□□□□ -0.6
CLK1-215ENST00000621181 CRB1P82279 1406 aa11.32□□□□□ -0.6
CLK1-215ENST00000621181 NBPF1Q3BBV0 1214 aa11.32□□□□□ -0.6
CLK1-215ENST00000621181 CABP2Q9NPB3 220 aa11.32□□□□□ -0.6
CLK1-215ENST00000621181 CENPJQ9HC77 1338 aaPredicted RBP11.31□□□□□ -0.6
CLK1-215ENST00000621181 OVOS2A0A0G2JMS6 1433 aa11.31□□□□□ -0.6
CLK1-215ENST00000621181 OVOS2A0A0J9YW53 1432 aa11.31□□□□□ -0.6
CLK1-215ENST00000621181 OVOS2Q6IE36 1432 aa11.31□□□□□ -0.6
CLK1-215ENST00000621181 PARP4Q9UKK3 1724 aaKnown RBP11.31□□□□□ -0.6
CLK1-215ENST00000621181 KIAA1210Q9ULL0 1709 aa11.31□□□□□ -0.6
CLK1-215ENST00000621181 NLRP6P59044 892 aa11.31□□□□□ -0.6
CLK1-215ENST00000621181 KCNQ2O43526 872 aa11.3□□□□□ -0.6
CLK1-215ENST00000621181 TOM1L2Q6ZVM7 507 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms