RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NUTM2EB1AL46 878 aaPredicted RBP23.09■■□□□ 1.29
CCDC28A-202ENST00000611852 NUTM2AQ8IVF1 878 aaPredicted RBP23.09■■□□□ 1.29
CCDC28A-202ENST00000611852 BRD4O60885 1362 aaPredicted RBP23.08■■□□□ 1.29
CCDC28A-202ENST00000611852 SSH2Q76I76 1423 aa23.08■■□□□ 1.28
CCDC28A-202ENST00000611852 KTN1Q86UP2 1357 aaKnown RBP23.06■■□□□ 1.28
CCDC28A-202ENST00000611852 TERF2IPQ9NYB0 399 aa23.05■■□□□ 1.28
CCDC28A-202ENST00000611852 MON2Q7Z3U7 1717 aa23.04■■□□□ 1.28
CCDC28A-202ENST00000611852 HDGFL2Q7Z4V5 671 aaPredicted RBP23.04■■□□□ 1.28
CCDC28A-202ENST00000611852 A0A1W2PP64 1363 aa23.04■■□□□ 1.28
CCDC28A-202ENST00000611852 C11orf95C9JLR9 678 aaPredicted RBP23.03■■□□□ 1.28
CCDC28A-202ENST00000611852 MYOM1P52179 1685 aa23.03■■□□□ 1.28
CCDC28A-202ENST00000611852 NRKQ7Z2Y5 1582 aa23.03■■□□□ 1.28
CCDC28A-202ENST00000611852 ABTB2Q8N961 1025 aa23.03■■□□□ 1.28
CCDC28A-202ENST00000611852 CABLES1Q8TDN4 633 aa23.03■■□□□ 1.28
CCDC28A-202ENST00000611852 TTC21BQ7Z4L5 1316 aa23.02■■□□□ 1.28
CCDC28A-202ENST00000611852 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
CCDC28A-202ENST00000611852 ANKRD36BQ8N2N9 1353 aa23.01■■□□□ 1.27
CCDC28A-202ENST00000611852 PLEKHG5O94827 1062 aa23.01■■□□□ 1.27
CCDC28A-202ENST00000611852 MEX3CQ5U5Q3 659 aaKnown RBP23.01■■□□□ 1.27
CCDC28A-202ENST00000611852 ABCA3Q99758 1704 aa23■■□□□ 1.27
CCDC28A-202ENST00000611852 ADAMTS2O95450 1211 aa23■■□□□ 1.27
CCDC28A-202ENST00000611852 NUTM2GQ5VZR2 741 aa23■■□□□ 1.27
CCDC28A-202ENST00000611852 POLR3GLQ9BT43 218 aa23■■□□□ 1.27
CCDC28A-202ENST00000611852 TTC21AQ8NDW8 1320 aa22.99■■□□□ 1.27
CCDC28A-202ENST00000611852 CRYBG1Q9Y4K1 1723 aa22.98■■□□□ 1.27
CCDC28A-202ENST00000611852 PIK3C2AO00443 1686 aa22.98■■□□□ 1.27
CCDC28A-202ENST00000611852 EDC4Q6P2E9 1401 aaKnown RBP22.98■■□□□ 1.27
CCDC28A-202ENST00000611852 HAP1P54257 671 aaPredicted RBP22.97■■□□□ 1.27
CCDC28A-202ENST00000611852 PHF23Q9BUL5 403 aaPredicted RBP22.97■■□□□ 1.27
CCDC28A-202ENST00000611852 NLRP13Q86W25 1043 aa22.96■■□□□ 1.27
CCDC28A-202ENST00000611852 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.96■■□□□ 1.27
CCDC28A-202ENST00000611852 USP19O94966 1318 aa22.95■■□□□ 1.26
CCDC28A-202ENST00000611852 KIF7Q2M1P5 1343 aa22.95■■□□□ 1.26
CCDC28A-202ENST00000611852 MARF1Q9Y4F3 1742 aaKnown RBP22.95■■□□□ 1.26
CCDC28A-202ENST00000611852 NLRP6P59044 892 aa22.95■■□□□ 1.26
CCDC28A-202ENST00000611852 C8orf37Q96NL8 207 aa22.95■■□□□ 1.26
CCDC28A-202ENST00000611852 PHRF1Q9P1Y6 1649 aaKnown RBP22.93■■□□□ 1.26
CCDC28A-202ENST00000611852 RGS17Q9UGC6 210 aaPredicted RBP22.93■■□□□ 1.26
CCDC28A-202ENST00000611852 NME9Q86XW9 330 aa22.92■■□□□ 1.26
CCDC28A-202ENST00000611852 NGLY1Q96IV0 654 aa22.92■■□□□ 1.26
CCDC28A-202ENST00000611852 CARD14Q9BXL6 1004 aa22.91■■□□□ 1.26
CCDC28A-202ENST00000611852 USP31Q70CQ4 1352 aa22.9■■□□□ 1.26
CCDC28A-202ENST00000611852 AFF2P51816 1311 aa22.9■■□□□ 1.26
CCDC28A-202ENST00000611852 SLIT3O75094 1523 aa22.89■■□□□ 1.26
CCDC28A-202ENST00000611852 ZRANB1Q9UGI0 708 aa22.89■■□□□ 1.26
CCDC28A-202ENST00000611852 GCP02774 474 aa22.88■■□□□ 1.25
CCDC28A-202ENST00000611852 FNBP4Q8N3X1 1017 aaPredicted RBP22.88■■□□□ 1.25
CCDC28A-202ENST00000611852 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
CCDC28A-202ENST00000611852 USP54Q70EL1 1684 aa22.88■■□□□ 1.25
CCDC28A-202ENST00000611852 CCDC7Q96M83 1385 aa22.88■■□□□ 1.25
CCDC28A-202ENST00000611852 FAM83GA6ND36 823 aa22.87■■□□□ 1.25
CCDC28A-202ENST00000611852 NSD3Q9BZ95 1437 aa22.86■■□□□ 1.25
CCDC28A-202ENST00000611852 ZC3H6P61129 1189 aaKnown RBP22.86■■□□□ 1.25
CCDC28A-202ENST00000611852 PANK3Q9H999 370 aa22.86■■□□□ 1.25
CCDC28A-202ENST00000611852 KIAA0232Q92628 1395 aa22.85■■□□□ 1.25
CCDC28A-202ENST00000611852 ZNF772Q68DY9 489 aaPredicted RBP22.85■■□□□ 1.25
CCDC28A-202ENST00000611852 OVOS2A0A0J9YW53 1432 aa22.85■■□□□ 1.25
CCDC28A-202ENST00000611852 OVOS2Q6IE36 1432 aa22.85■■□□□ 1.25
CCDC28A-202ENST00000611852 SLIT2O94813 1529 aa22.84■■□□□ 1.25
CCDC28A-202ENST00000611852 FYB1O15117 783 aa22.84■■□□□ 1.25
CCDC28A-202ENST00000611852 KCNH5Q8NCM2 988 aa22.83■■□□□ 1.25
CCDC28A-202ENST00000611852 PRDM11Q9NQV5 511 aa22.83■■□□□ 1.25
CCDC28A-202ENST00000611852 USP21Q9UK80 565 aa22.83■■□□□ 1.25
CCDC28A-202ENST00000611852 CPDO75976 1380 aa22.83■■□□□ 1.25
CCDC28A-202ENST00000611852 BCL9LQ86UU0 1499 aa22.83■■□□□ 1.25
CCDC28A-202ENST00000611852 COL14A1Q05707 1796 aaKnown RBP22.83■■□□□ 1.24
CCDC28A-202ENST00000611852 PLCH1Q4KWH8 1693 aa22.82■■□□□ 1.24
CCDC28A-202ENST00000611852 POTEAQ6S8J7 498 aa22.82■■□□□ 1.24
CCDC28A-202ENST00000611852 NFAT5O94916 1531 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 SOX12O15370 315 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 CHRNA2Q15822 529 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 COG3Q96JB2 828 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 GGNBP2Q9H3C7 697 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 KIF20BQ96Q89 1820 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 NWD2Q9ULI1 1742 aa22.8■■□□□ 1.24
CCDC28A-202ENST00000611852 CGNL1Q0VF96 1302 aa22.78■■□□□ 1.24
CCDC28A-202ENST00000611852 UNC5CLQ8IV45 518 aa22.78■■□□□ 1.24
CCDC28A-202ENST00000611852 BTG4Q9NY30 223 aa22.78■■□□□ 1.24
CCDC28A-202ENST00000611852 ARHGEF25Q86VW2 580 aa22.77■■□□□ 1.24
CCDC28A-202ENST00000611852 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.77■■□□□ 1.24
CCDC28A-202ENST00000611852 QTRT2Q9H974 415 aaKnown RBP22.77■■□□□ 1.24
CCDC28A-202ENST00000611852 LMO7Q8WWI1 1683 aa22.75■■□□□ 1.23
CCDC28A-202ENST00000611852 TRPC5Q9UL62 973 aaPredicted RBP22.75■■□□□ 1.23
CCDC28A-202ENST00000611852 ATRNO75882 1429 aa22.75■■□□□ 1.23
CCDC28A-202ENST00000611852 NRAPQ86VF7 1730 aa22.75■■□□□ 1.23
CCDC28A-202ENST00000611852 AATKQ6ZMQ8 1374 aa22.75■■□□□ 1.23
CCDC28A-202ENST00000611852 ZBTB7CA1YPR0 619 aa22.74■■□□□ 1.23
CCDC28A-202ENST00000611852 KNSTRNQ9Y448 316 aa22.73■■□□□ 1.23
CCDC28A-202ENST00000611852 CAMTA1Q9Y6Y1 1673 aa22.73■■□□□ 1.23
CCDC28A-202ENST00000611852 COL18A1P39060 1754 aa22.73■■□□□ 1.23
CCDC28A-202ENST00000611852 PER1O15534 1290 aaPredicted RBP22.72■■□□□ 1.23
CCDC28A-202ENST00000611852 LTN1O94822 1766 aa22.7■■□□□ 1.22
CCDC28A-202ENST00000611852 FBLN1P23142 703 aa22.7■■□□□ 1.22
CCDC28A-202ENST00000611852 RXRBP28702 533 aa22.7■■□□□ 1.22
CCDC28A-202ENST00000611852 VPS72Q15906 364 aa22.7■■□□□ 1.22
CCDC28A-202ENST00000611852 ILDR2Q71H61 639 aa22.7■■□□□ 1.22
CCDC28A-202ENST00000611852 RBM6P78332 1123 aaKnown RBP22.69■■□□□ 1.22
CCDC28A-202ENST00000611852 AXIN2Q9Y2T1 843 aa22.69■■□□□ 1.22
CCDC28A-202ENST00000611852 ANKRD26Q9UPS8 1709 aa22.69■■□□□ 1.22
CCDC28A-202ENST00000611852 NSD2O96028 1365 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms