RNA–Protein interactions for RNA: ENST00000606676.1

SHROOM1-207, Transcript of shroom family member 1, humanhuman

Gene SHROOM1, Length 351 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-207ENST00000606676 ATAD2Q6PL18 1390 aa18.07■□□□□ 0.48
SHROOM1-207ENST00000606676 USP47Q96K76 1375 aa18.07■□□□□ 0.48
SHROOM1-207ENST00000606676 QTRT2Q9H974 415 aaKnown RBP18.07■□□□□ 0.48
SHROOM1-207ENST00000606676 HAP1P54257 671 aaPredicted RBP18.06■□□□□ 0.48
SHROOM1-207ENST00000606676 USP21Q9UK80 565 aa18.06■□□□□ 0.48
SHROOM1-207ENST00000606676 BCL9LQ86UU0 1499 aa18.06■□□□□ 0.48
SHROOM1-207ENST00000606676 NUTM2GQ5VZR2 741 aa18.05■□□□□ 0.48
SHROOM1-207ENST00000606676 ABCA3Q99758 1704 aa18.05■□□□□ 0.48
SHROOM1-207ENST00000606676 USP6P35125 1406 aa18.05■□□□□ 0.48
SHROOM1-207ENST00000606676 SSH2Q76I76 1423 aa18.05■□□□□ 0.48
SHROOM1-207ENST00000606676 SLIT2O94813 1529 aa18.04■□□□□ 0.48
SHROOM1-207ENST00000606676 MARF1Q9Y4F3 1742 aaKnown RBP18.04■□□□□ 0.48
SHROOM1-207ENST00000606676 RXRBP28702 533 aa18.04■□□□□ 0.48
SHROOM1-207ENST00000606676 PUS7Q96PZ0 661 aaKnown RBP18.04■□□□□ 0.48
SHROOM1-207ENST00000606676 BRD4O60885 1362 aaPredicted RBP18.04■□□□□ 0.48
SHROOM1-207ENST00000606676 FAM83GA6ND36 823 aa18.03■□□□□ 0.48
SHROOM1-207ENST00000606676 ABTB2Q8N961 1025 aa18.03■□□□□ 0.48
SHROOM1-207ENST00000606676 ZNF692Q9BU19 519 aaPredicted RBP18.03■□□□□ 0.48
SHROOM1-207ENST00000606676 CPSF1Q10570 1443 aaKnown RBP18.03■□□□□ 0.48
SHROOM1-207ENST00000606676 CRYBG1Q9Y4K1 1723 aa18.02■□□□□ 0.48
SHROOM1-207ENST00000606676 ATRNO75882 1429 aa18.01■□□□□ 0.47
SHROOM1-207ENST00000606676 SLC24A1O60721 1099 aa18.01■□□□□ 0.47
SHROOM1-207ENST00000606676 RBM6P78332 1123 aaKnown RBP18.01■□□□□ 0.47
SHROOM1-207ENST00000606676 SLC12A5Q9H2X9 1139 aa18.01■□□□□ 0.47
SHROOM1-207ENST00000606676 TRPC5Q9UL62 973 aaPredicted RBP18.01■□□□□ 0.47
SHROOM1-207ENST00000606676 CD163L1Q9NR16 1453 aa18.01■□□□□ 0.47
SHROOM1-207ENST00000606676 UNC5CLQ8IV45 518 aa18■□□□□ 0.47
SHROOM1-207ENST00000606676 USP19O94966 1318 aa17.99■□□□□ 0.47
SHROOM1-207ENST00000606676 TTC21BQ7Z4L5 1316 aa17.99■□□□□ 0.47
SHROOM1-207ENST00000606676 TMC1Q8TDI8 760 aa17.99■□□□□ 0.47
SHROOM1-207ENST00000606676 NLRP13Q86W25 1043 aa17.98■□□□□ 0.47
SHROOM1-207ENST00000606676 KTN1Q86UP2 1357 aaKnown RBP17.98■□□□□ 0.47
SHROOM1-207ENST00000606676 CDK12Q9NYV4 1490 aaPredicted RBP17.98■□□□□ 0.47
SHROOM1-207ENST00000606676 TMF1P82094 1093 aa17.97■□□□□ 0.47
SHROOM1-207ENST00000606676 AKAP12Q02952 1782 aa17.96■□□□□ 0.47
SHROOM1-207ENST00000606676 KIAA0232Q92628 1395 aa17.96■□□□□ 0.47
SHROOM1-207ENST00000606676 GCP02774 474 aa17.96■□□□□ 0.47
SHROOM1-207ENST00000606676 NLRP6P59044 892 aa17.96■□□□□ 0.47
SHROOM1-207ENST00000606676 PHRF1Q9P1Y6 1649 aaKnown RBP17.96■□□□□ 0.47
SHROOM1-207ENST00000606676 ZC3H6P61129 1189 aaKnown RBP17.95■□□□□ 0.46
SHROOM1-207ENST00000606676 GJD4Q96KN9 370 aaPredicted RBP17.95■□□□□ 0.46
SHROOM1-207ENST00000606676 PRDM11Q9NQV5 511 aa17.95■□□□□ 0.46
SHROOM1-207ENST00000606676 BTG4Q9NY30 223 aa17.95■□□□□ 0.46
SHROOM1-207ENST00000606676 TTC21AQ8NDW8 1320 aa17.95■□□□□ 0.46
SHROOM1-207ENST00000606676 A0A1W2PP64 1363 aa17.94■□□□□ 0.46
SHROOM1-207ENST00000606676 PIK3C2AO00443 1686 aa17.94■□□□□ 0.46
SHROOM1-207ENST00000606676 PLCH1Q4KWH8 1693 aa17.94■□□□□ 0.46
SHROOM1-207ENST00000606676 RGS12O14924 1447 aa17.94■□□□□ 0.46
SHROOM1-207ENST00000606676 NRKQ7Z2Y5 1582 aa17.94■□□□□ 0.46
SHROOM1-207ENST00000606676 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.94■□□□□ 0.46
SHROOM1-207ENST00000606676 NINLQ9Y2I6 1382 aa17.93■□□□□ 0.46
SHROOM1-207ENST00000606676 CHRNA2Q15822 529 aa17.93■□□□□ 0.46
SHROOM1-207ENST00000606676 VPS72Q15906 364 aa17.93■□□□□ 0.46
SHROOM1-207ENST00000606676 HDGFL2Q7Z4V5 671 aaPredicted RBP17.93■□□□□ 0.46
SHROOM1-207ENST00000606676 TERF2IPQ9NYB0 399 aa17.93■□□□□ 0.46
SHROOM1-207ENST00000606676 COL14A1Q05707 1796 aaKnown RBP17.93■□□□□ 0.46
SHROOM1-207ENST00000606676 CPDO75976 1380 aa17.92■□□□□ 0.46
SHROOM1-207ENST00000606676 NWD2Q9ULI1 1742 aa17.92■□□□□ 0.46
SHROOM1-207ENST00000606676 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.92■□□□□ 0.46
SHROOM1-207ENST00000606676 MON2Q7Z3U7 1717 aa17.92■□□□□ 0.46
SHROOM1-207ENST00000606676 HSPA5P11021 654 aaKnown RBP17.91■□□□□ 0.46
SHROOM1-207ENST00000606676 EIF4G2P78344 907 aaKnown RBP eCLIP17.91■□□□□ 0.46
SHROOM1-207ENST00000606676 ZRANB1Q9UGI0 708 aa17.91■□□□□ 0.46
SHROOM1-207ENST00000606676 SLIT3O75094 1523 aa17.91■□□□□ 0.46
SHROOM1-207ENST00000606676 CDCA8Q53HL2 280 aa17.9■□□□□ 0.46
SHROOM1-207ENST00000606676 GLI3P10071 1580 aa17.9■□□□□ 0.46
SHROOM1-207ENST00000606676 EDC4Q6P2E9 1401 aaKnown RBP17.89■□□□□ 0.46
SHROOM1-207ENST00000606676 NRAPQ86VF7 1730 aa17.89■□□□□ 0.46
SHROOM1-207ENST00000606676 NME9Q86XW9 330 aa17.89■□□□□ 0.45
SHROOM1-207ENST00000606676 USP31Q70CQ4 1352 aa17.89■□□□□ 0.45
SHROOM1-207ENST00000606676 EP400Q96L91 3159 aa17.87■□□□□ 0.45
SHROOM1-207ENST00000606676 ANKRD36BQ8N2N9 1353 aa17.87■□□□□ 0.45
SHROOM1-207ENST00000606676 ONECUT3O60422 494 aaPredicted RBP17.86■□□□□ 0.45
SHROOM1-207ENST00000606676 CCDC9Q9Y3X0 531 aaKnown RBP17.86■□□□□ 0.45
SHROOM1-207ENST00000606676 CAMTA1Q9Y6Y1 1673 aa17.86■□□□□ 0.45
SHROOM1-207ENST00000606676 SPATA31A5Q5VU36 1347 aa17.85■□□□□ 0.45
SHROOM1-207ENST00000606676 ARHGEF25Q86VW2 580 aa17.85■□□□□ 0.45
SHROOM1-207ENST00000606676 SPATA31A7Q8IWB4 1347 aa17.85■□□□□ 0.45
SHROOM1-207ENST00000606676 KCNH5Q8NCM2 988 aa17.85■□□□□ 0.45
SHROOM1-207ENST00000606676 LMO7Q8WWI1 1683 aa17.85■□□□□ 0.45
SHROOM1-207ENST00000606676 AATKQ6ZMQ8 1374 aa17.84■□□□□ 0.45
SHROOM1-207ENST00000606676 NFAT5O94916 1531 aa17.83■□□□□ 0.45
SHROOM1-207ENST00000606676 SOX12O15370 315 aa17.83■□□□□ 0.44
SHROOM1-207ENST00000606676 STRN4Q9NRL3 753 aa17.83■□□□□ 0.44
SHROOM1-207ENST00000606676 USP54Q70EL1 1684 aa17.83■□□□□ 0.44
SHROOM1-207ENST00000606676 ZBTB7CA1YPR0 619 aa17.82■□□□□ 0.44
SHROOM1-207ENST00000606676 SEPT12Q8IYM1 358 aa17.82■□□□□ 0.44
SHROOM1-207ENST00000606676 UPF1Q92900 1129 aaKnown RBP eCLIP17.82■□□□□ 0.44
SHROOM1-207ENST00000606676 AXIN2Q9Y2T1 843 aa17.82■□□□□ 0.44
SHROOM1-207ENST00000606676 OVOS2A0A0J9YW53 1432 aa17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 OVOS2Q6IE36 1432 aa17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 SPATA31A1Q5TZJ5 1347 aa17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 C11orf95C9JLR9 678 aaPredicted RBP17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 EVA1CP58658 441 aa17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 FAM98CQ17RN3 349 aaKnown RBP17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 LARP1Q6PKG0 1096 aaKnown RBP17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 CARD14Q9BXL6 1004 aa17.81■□□□□ 0.44
SHROOM1-207ENST00000606676 MYOM1P52179 1685 aa17.8■□□□□ 0.44
SHROOM1-207ENST00000606676 COL5A2P05997 1499 aaPredicted RBP17.8■□□□□ 0.44
SHROOM1-207ENST00000606676 COL18A1P39060 1754 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms