RNA–Protein interactions for RNA: ENST00000604740.5

LAMA4-222, Transcript of laminin subunit alpha 4, human

TSL 2

Gene LAMA4, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LAMA4-222	ENST00000604740	NUTM2B	A6NNL0	878 aa	Predicted RBP	9.62	□□□□□ -0.87
LAMA4-222	ENST00000604740	NUTM2E	B1AL46	878 aa	Predicted RBP	9.62	□□□□□ -0.87
LAMA4-222	ENST00000604740	NUTM2D	Q5VT03	806 aa	Predicted RBP	9.62	□□□□□ -0.87
LAMA4-222	ENST00000604740	NUTM2A	Q8IVF1	878 aa	Predicted RBP	9.62	□□□□□ -0.87
LAMA4-222	ENST00000604740	TLL2	Q9Y6L7	1015 aa		9.62	□□□□□ -0.87
LAMA4-222	ENST00000604740	MAP10	Q9P2G4	905 aa		9.61	□□□□□ -0.87
LAMA4-222	ENST00000604740	QPCT	Q16769	361 aa		9.6	□□□□□ -0.87
LAMA4-222	ENST00000604740	F12	P00748	615 aa	Predicted RBP	9.59	□□□□□ -0.87
LAMA4-222	ENST00000604740	PER1	O15534	1290 aa	Predicted RBP	9.58	□□□□□ -0.88
LAMA4-222	ENST00000604740	VARS	P26640	1264 aa	Known RBP	9.58	□□□□□ -0.88
LAMA4-222	ENST00000604740	CLK2	P49760	499 aa	Known RBP	9.58	□□□□□ -0.88
LAMA4-222	ENST00000604740	SENP2	Q9HC62	589 aa		9.58	□□□□□ -0.88
LAMA4-222	ENST00000604740	LILRB3	O75022	631 aa		9.57	□□□□□ -0.88
LAMA4-222	ENST00000604740	SNRPB	P14678	240 aa	Known RBP	9.57	□□□□□ -0.88
LAMA4-222	ENST00000604740	TUSC1	Q2TAM9	212 aa		9.57	□□□□□ -0.88
LAMA4-222	ENST00000604740	TRIM47	Q96LD4	638 aa		9.57	□□□□□ -0.88
LAMA4-222	ENST00000604740	PLEKHG3	A1L390	1219 aa		9.56	□□□□□ -0.88
LAMA4-222	ENST00000604740	CAPN5	O15484	640 aa	Predicted RBP	9.56	□□□□□ -0.88
LAMA4-222	ENST00000604740	TREML4	Q6UXN2	200 aa		9.56	□□□□□ -0.88
LAMA4-222	ENST00000604740	BMP1	P13497	986 aa		9.55	□□□□□ -0.88
LAMA4-222	ENST00000604740	HELB	Q8NG08	1087 aa	Predicted RBP	9.55	□□□□□ -0.88
LAMA4-222	ENST00000604740	FOXJ1	Q92949	421 aa		9.55	□□□□□ -0.88
LAMA4-222	ENST00000604740	KIFC2	Q96AC6	838 aa		9.55	□□□□□ -0.88
LAMA4-222	ENST00000604740	RSPH6A	Q9H0K4	717 aa		9.55	□□□□□ -0.88
LAMA4-222	ENST00000604740	POLR3E	Q9NVU0	708 aa		9.55	□□□□□ -0.88
LAMA4-222	ENST00000604740	NNT	Q13423	1086 aa		9.54	□□□□□ -0.88
LAMA4-222	ENST00000604740	AGER	Q15109	404 aa		9.54	□□□□□ -0.88
LAMA4-222	ENST00000604740	RTL5	Q5HYW3	569 aa	Predicted RBP	9.54	□□□□□ -0.88
LAMA4-222	ENST00000604740	FAM174A	Q8TBP5	190 aa		9.54	□□□□□ -0.88
LAMA4-222	ENST00000604740	BCAN	Q96GW7	911 aa		9.54	□□□□□ -0.88
LAMA4-222	ENST00000604740	WFS1	O76024	890 aa		9.52	□□□□□ -0.89
LAMA4-222	ENST00000604740	ARID5B	Q14865	1188 aa		9.52	□□□□□ -0.89
LAMA4-222	ENST00000604740	MPND	Q8N594	471 aa		9.52	□□□□□ -0.89
LAMA4-222	ENST00000604740	TRIM46	Q7Z4K8	759 aa		9.51	□□□□□ -0.89
LAMA4-222	ENST00000604740	GPBP1L1	Q9HC44	474 aa	Predicted RBP	9.51	□□□□□ -0.89
LAMA4-222	ENST00000604740	ADH1C	P00326	375 aa		9.5	□□□□□ -0.89
LAMA4-222	ENST00000604740	LCE2A	Q5TA79	106 aa	Predicted RBP	9.5	□□□□□ -0.89
LAMA4-222	ENST00000604740	BPHL	Q86WA6	291 aa	Predicted RBP	9.5	□□□□□ -0.89
LAMA4-222	ENST00000604740	ARMC2	Q8NEN0	867 aa		9.5	□□□□□ -0.89
LAMA4-222	ENST00000604740	NFX1	Q12986	1120 aa	Known RBP	9.49	□□□□□ -0.89
LAMA4-222	ENST00000604740	C4orf48	Q5BLP8	95 aa		9.49	□□□□□ -0.89
LAMA4-222	ENST00000604740	KDM4C	Q9H3R0	1056 aa		9.49	□□□□□ -0.89
LAMA4-222	ENST00000604740	WDR4	P57081	412 aa	Known RBP	9.48	□□□□□ -0.89
LAMA4-222	ENST00000604740	NBPF14	Q5TI25	921 aa		9.48	□□□□□ -0.89
LAMA4-222	ENST00000604740	ATP1B4	Q9UN42	357 aa	Predicted RBP	9.48	□□□□□ -0.89
LAMA4-222	ENST00000604740	CDK15	Q96Q40	435 aa		9.47	□□□□□ -0.89
LAMA4-222	ENST00000604740	SLC24A1	O60721	1099 aa		9.46	□□□□□ -0.9
LAMA4-222	ENST00000604740	TIMP2	P16035	220 aa		9.46	□□□□□ -0.9
LAMA4-222	ENST00000604740	DDRGK1	Q96HY6	314 aa		9.46	□□□□□ -0.9
LAMA4-222	ENST00000604740	FAM117A	Q9C073	453 aa		9.46	□□□□□ -0.9
LAMA4-222	ENST00000604740	TERT	O14746	1132 aa	Known RBP	9.45	□□□□□ -0.9
LAMA4-222	ENST00000604740	CTDSPL2	Q05D32	466 aa		9.45	□□□□□ -0.9
LAMA4-222	ENST00000604740	SKIV2L	Q15477	1246 aa	Known RBP	9.45	□□□□□ -0.9
LAMA4-222	ENST00000604740	SH3D19	Q5HYK7	790 aa		9.45	□□□□□ -0.9
LAMA4-222	ENST00000604740	ZFP42	Q96MM3	310 aa		9.45	□□□□□ -0.9
LAMA4-222	ENST00000604740	MAGEB6P1	A0A0J9YX57	407 aa		9.44	□□□□□ -0.9
LAMA4-222	ENST00000604740	ZIC2	O95409	532 aa	Predicted RBP	9.43	□□□□□ -0.9
LAMA4-222	ENST00000604740	NR3C2	P08235	984 aa		9.43	□□□□□ -0.9
LAMA4-222	ENST00000604740	NR5A1	Q13285	461 aa		9.43	□□□□□ -0.9
LAMA4-222	ENST00000604740	MRPL14	Q6P1L8	145 aa	Known RBP	9.43	□□□□□ -0.9
LAMA4-222	ENST00000604740	SH3RF1	Q7Z6J0	888 aa		9.43	□□□□□ -0.9
LAMA4-222	ENST00000604740	CARD14	Q9BXL6	1004 aa		9.43	□□□□□ -0.9
LAMA4-222	ENST00000604740	FSHR	P23945	695 aa		9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	SCARF1	Q14162	830 aa		9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	SH3BP5L	Q7L8J4	393 aa		9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	PROCA1	Q8NCQ7	364 aa	Predicted RBP	9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	PURB	Q96QR8	312 aa	Known RBP	9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	C1QTNF2	Q9BXJ5	285 aa		9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	KLF16	Q9BXK1	252 aa	Predicted RBP	9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	ZFAND3	Q9H8U3	227 aa		9.42	□□□□□ -0.9
LAMA4-222	ENST00000604740	GRM5	P41594	1212 aa		9.41	□□□□□ -0.9
LAMA4-222	ENST00000604740	FBXO31	Q5XUX0	539 aa	Predicted RBP	9.41	□□□□□ -0.9
LAMA4-222	ENST00000604740	LRRN4	Q8WUT4	740 aa		9.41	□□□□□ -0.9
LAMA4-222	ENST00000604740	ITPKC	Q96DU7	683 aa		9.41	□□□□□ -0.9
LAMA4-222	ENST00000604740	VASH1	Q7L8A9	365 aa	Predicted RBP	9.4	□□□□□ -0.9
LAMA4-222	ENST00000604740	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	9.4	□□□□□ -0.9
LAMA4-222	ENST00000604740	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	9.4	□□□□□ -0.9
LAMA4-222	ENST00000604740	NXF1	Q9UBU9	619 aa	Known RBP	9.4	□□□□□ -0.9
LAMA4-222	ENST00000604740	LCE2C	Q5TA81	110 aa		9.39	□□□□□ -0.91
LAMA4-222	ENST00000604740	PPP2R2D	Q66LE6	453 aa		9.38	□□□□□ -0.91
LAMA4-222	ENST00000604740	TRMT44	Q8IYL2	757 aa	Known RBP	9.38	□□□□□ -0.91
LAMA4-222	ENST00000604740	SLC16A10	Q8TF71	515 aa		9.38	□□□□□ -0.91
LAMA4-222	ENST00000604740	FKBPL	Q9UIM3	349 aa		9.38	□□□□□ -0.91
LAMA4-222	ENST00000604740	MAP4K5	Q9Y4K4	846 aa		9.38	□□□□□ -0.91
LAMA4-222	ENST00000604740	WIPF1	O43516	503 aa		9.37	□□□□□ -0.91
LAMA4-222	ENST00000604740	AP1G2	O75843	785 aa		9.37	□□□□□ -0.91
LAMA4-222	ENST00000604740	NR6A1	Q15406	480 aa		9.37	□□□□□ -0.91
LAMA4-222	ENST00000604740	ARHGAP9	Q9BRR9	750 aa		9.37	□□□□□ -0.91
LAMA4-222	ENST00000604740	VEGFB	P49765	207 aa		9.36	□□□□□ -0.91
LAMA4-222	ENST00000604740	ERFE	Q4G0M1	354 aa		9.36	□□□□□ -0.91
LAMA4-222	ENST00000604740	C6orf118	Q5T5N4	469 aa		9.36	□□□□□ -0.91
LAMA4-222	ENST00000604740	SOBP	A7XYQ1	873 aa		9.35	□□□□□ -0.91
LAMA4-222	ENST00000604740	PDXDC2P	Q6P474	469 aa		9.35	□□□□□ -0.91
LAMA4-222	ENST00000604740	CCDC116	Q8IYX3	515 aa		9.35	□□□□□ -0.91
LAMA4-222	ENST00000604740	UPP2	O95045	317 aa		9.34	□□□□□ -0.91
LAMA4-222	ENST00000604740	INSM1	Q01101	510 aa	Predicted RBP	9.34	□□□□□ -0.91
LAMA4-222	ENST00000604740	LINC00528	Q8N1L1	170 aa		9.34	□□□□□ -0.91
LAMA4-222	ENST00000604740	SLC10A4	Q96EP9	437 aa		9.34	□□□□□ -0.91
LAMA4-222	ENST00000604740	BMP2	P12643	396 aa		9.33	□□□□□ -0.92
LAMA4-222	ENST00000604740	ZBTB33	Q86T24	672 aa		9.33	□□□□□ -0.92

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