RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 MINK1Q8N4C8 1332 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-214ENST00000600840 PRR36Q9H6K5 1346 aa12.65□□□□□ -0.38
TRIM28-214ENST00000600840 FAM83GA6ND36 823 aa12.65□□□□□ -0.38
TRIM28-214ENST00000600840 PMFBP1Q8TBY8 1022 aa12.65□□□□□ -0.38
TRIM28-214ENST00000600840 ADGRB2O60241 1585 aa12.64□□□□□ -0.39
TRIM28-214ENST00000600840 NEUROD1Q13562 356 aa12.64□□□□□ -0.39
TRIM28-214ENST00000600840 LMOD2Q6P5Q4 547 aa12.64□□□□□ -0.39
TRIM28-214ENST00000600840 L3MBTL2Q969R5 705 aa12.64□□□□□ -0.39
TRIM28-214ENST00000600840 THSD7AQ9UPZ6 1657 aa12.64□□□□□ -0.39
TRIM28-214ENST00000600840 DISP2A7MBM2 1401 aa12.63□□□□□ -0.39
TRIM28-214ENST00000600840 ARHGEF28Q8N1W1 1705 aaKnown RBP12.63□□□□□ -0.39
TRIM28-214ENST00000600840 CAMTA1Q9Y6Y1 1673 aa12.63□□□□□ -0.39
TRIM28-214ENST00000600840 NUP188Q5SRE5 1749 aa12.62□□□□□ -0.39
TRIM28-214ENST00000600840 RREB1Q92766 1687 aa12.62□□□□□ -0.39
TRIM28-214ENST00000600840 TIMELESSQ9UNS1 1208 aa12.62□□□□□ -0.39
TRIM28-214ENST00000600840 TRPM3Q9HCF6 1732 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-214ENST00000600840 BTG4Q9NY30 223 aa12.61□□□□□ -0.39
TRIM28-214ENST00000600840 COL14A1Q05707 1796 aaKnown RBP12.61□□□□□ -0.39
TRIM28-214ENST00000600840 SBNO1A3KN83 1393 aa12.6□□□□□ -0.39
TRIM28-214ENST00000600840 WASLO00401 505 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-214ENST00000600840 PSME1Q06323 249 aa12.6□□□□□ -0.39
TRIM28-214ENST00000600840 NBPF1Q3BBV0 1214 aa12.6□□□□□ -0.39
TRIM28-214ENST00000600840 STAC3Q96MF2 364 aa12.6□□□□□ -0.39
TRIM28-214ENST00000600840 CAMKK2Q96RR4 588 aa12.6□□□□□ -0.39
TRIM28-214ENST00000600840 ANKARQ7Z5J8 1434 aa12.6□□□□□ -0.39
TRIM28-214ENST00000600840 TULP4Q9NRJ4 1543 aa12.59□□□□□ -0.39
TRIM28-214ENST00000600840 ALS2Q96Q42 1657 aa12.59□□□□□ -0.39
TRIM28-214ENST00000600840 TRIM37O94972 964 aa12.59□□□□□ -0.39
TRIM28-214ENST00000600840 CRYBG1Q9Y4K1 1723 aa12.58□□□□□ -0.4
TRIM28-214ENST00000600840 SPATA31A5Q5VU36 1347 aa12.58□□□□□ -0.4
TRIM28-214ENST00000600840 SPATA31A7Q8IWB4 1347 aa12.58□□□□□ -0.4
TRIM28-214ENST00000600840 ARHGEF10O15013 1369 aa12.57□□□□□ -0.4
TRIM28-214ENST00000600840 APBA3O96018 575 aa12.56□□□□□ -0.4
TRIM28-214ENST00000600840 NBPF8Q3BBV2 869 aa12.56□□□□□ -0.4
TRIM28-214ENST00000600840 ATP7BP35670 1465 aa12.56□□□□□ -0.4
TRIM28-214ENST00000600840 KIAA1210Q9ULL0 1709 aa12.55□□□□□ -0.4
TRIM28-214ENST00000600840 NUDT16Q96DE0 195 aaKnown RBP12.55□□□□□ -0.4
TRIM28-214ENST00000600840 CDK19Q9BWU1 502 aa12.54□□□□□ -0.4
TRIM28-214ENST00000600840 PPP1R1BQ9UD71 204 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-214ENST00000600840 TONSLQ96HA7 1378 aa12.54□□□□□ -0.4
TRIM28-214ENST00000600840 NGDNQ8NEJ9 315 aaKnown RBP12.53□□□□□ -0.4
TRIM28-214ENST00000600840 TOPAZ1Q8N9V7 1692 aa12.52□□□□□ -0.4
TRIM28-214ENST00000600840 ITSN1Q15811 1721 aa12.52□□□□□ -0.41
TRIM28-214ENST00000600840 SPON1Q9HCB6 807 aa12.52□□□□□ -0.41
TRIM28-214ENST00000600840 GPRASP1Q5JY77 1395 aa12.52□□□□□ -0.41
TRIM28-214ENST00000600840 PARD3Q8TEW0 1356 aa12.52□□□□□ -0.41
TRIM28-214ENST00000600840 PAK3O75914 559 aaPredicted RBP12.51□□□□□ -0.41
TRIM28-214ENST00000600840 FAM196AQ6ZSG2 479 aa12.51□□□□□ -0.41
TRIM28-214ENST00000600840 SPATA31A1Q5TZJ5 1347 aa12.51□□□□□ -0.41
TRIM28-214ENST00000600840 EIF3AQ14152 1382 aaKnown RBP12.51□□□□□ -0.41
TRIM28-214ENST00000600840 NINLQ9Y2I6 1382 aa12.51□□□□□ -0.41
TRIM28-214ENST00000600840 NRKQ7Z2Y5 1582 aa12.51□□□□□ -0.41
TRIM28-214ENST00000600840 SENP3-EIF4A1A0A087X0R7 540 aa12.5□□□□□ -0.41
TRIM28-214ENST00000600840 KCNQ2O43526 872 aa12.5□□□□□ -0.41
TRIM28-214ENST00000600840 NUTM2GQ5VZR2 741 aa12.5□□□□□ -0.41
TRIM28-214ENST00000600840 ZNF784Q8NCA9 323 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-214ENST00000600840 ACEP12821 1306 aa12.5□□□□□ -0.41
TRIM28-214ENST00000600840 PHRF1Q9P1Y6 1649 aaKnown RBP12.49□□□□□ -0.41
TRIM28-214ENST00000600840 DCAF8L1A6NGE4 600 aa12.49□□□□□ -0.41
TRIM28-214ENST00000600840 CHRNA2Q15822 529 aa12.49□□□□□ -0.41
TRIM28-214ENST00000600840 NBPF14Q5TI25 921 aa12.49□□□□□ -0.41
TRIM28-214ENST00000600840 PRDM11Q9NQV5 511 aa12.49□□□□□ -0.41
TRIM28-214ENST00000600840 STRN4Q9NRL3 753 aa12.49□□□□□ -0.41
TRIM28-214ENST00000600840 USP35Q9P2H5 1018 aa12.49□□□□□ -0.41
TRIM28-214ENST00000600840 CASZ1Q86V15 1759 aa12.48□□□□□ -0.41
TRIM28-214ENST00000600840 MYOM1P52179 1685 aa12.48□□□□□ -0.41
TRIM28-214ENST00000600840 POLR3AO14802 1390 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-214ENST00000600840 PLEKHG3A1L390 1219 aa12.48□□□□□ -0.41
TRIM28-214ENST00000600840 CABP2Q9NPB3 220 aa12.48□□□□□ -0.41
TRIM28-214ENST00000600840 QRICH2Q9H0J4 1663 aa12.48□□□□□ -0.41
TRIM28-214ENST00000600840 KIAA0232Q92628 1395 aa12.47□□□□□ -0.41
TRIM28-214ENST00000600840 CCDC61Q9Y6R9 512 aa12.47□□□□□ -0.41
TRIM28-214ENST00000600840 TRPM1Q7Z4N2 1603 aa12.47□□□□□ -0.41
TRIM28-214ENST00000600840 CENPJQ9HC77 1338 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-214ENST00000600840 ZC3H6P61129 1189 aaKnown RBP12.46□□□□□ -0.41
TRIM28-214ENST00000600840 IFFO2Q5TF58 517 aa12.46□□□□□ -0.41
TRIM28-214ENST00000600840 PDGFDQ9GZP0 370 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-214ENST00000600840 ANO8Q9HCE9 1232 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-214ENST00000600840 SRPK2P78362 688 aaKnown RBP12.44□□□□□ -0.42
TRIM28-214ENST00000600840 PDE3BQ13370 1112 aa12.44□□□□□ -0.42
TRIM28-214ENST00000600840 PPIP5K1Q6PFW1 1433 aa12.44□□□□□ -0.42
TRIM28-214ENST00000600840 CHD4Q14839 1912 aa12.43□□□□□ -0.42
TRIM28-214ENST00000600840 SBF2Q86WG5 1849 aa12.43□□□□□ -0.42
TRIM28-214ENST00000600840 SSH2Q76I76 1423 aa12.43□□□□□ -0.42
TRIM28-214ENST00000600840 C1QTNF8P60827 252 aa12.42□□□□□ -0.42
TRIM28-214ENST00000600840 ABTB2Q8N961 1025 aa12.42□□□□□ -0.42
TRIM28-214ENST00000600840 CABP1Q9NZU7 370 aa12.42□□□□□ -0.42
TRIM28-214ENST00000600840 RGPD3A6NKT7 1758 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-214ENST00000600840 RGPD4Q7Z3J3 1758 aa12.42□□□□□ -0.42
TRIM28-214ENST00000600840 PEAK1Q9H792 1746 aa12.42□□□□□ -0.42
TRIM28-214ENST00000600840 PARP4Q9UKK3 1724 aaKnown RBP12.42□□□□□ -0.42
TRIM28-214ENST00000600840 ZBTB7AO95365 584 aa12.41□□□□□ -0.42
TRIM28-214ENST00000600840 LARP1Q6PKG0 1096 aaKnown RBP12.41□□□□□ -0.42
TRIM28-214ENST00000600840 BARGINQ6ZT62 677 aa12.41□□□□□ -0.42
TRIM28-214ENST00000600840 USP19O94966 1318 aa12.4□□□□□ -0.42
TRIM28-214ENST00000600840 ZEB1P37275 1124 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-214ENST00000600840 PTF1AQ7RTS3 328 aa12.4□□□□□ -0.42
TRIM28-214ENST00000600840 LMO7Q8WWI1 1683 aa12.4□□□□□ -0.42
TRIM28-214ENST00000600840 PTGER2P43116 358 aa12.39□□□□□ -0.43
TRIM28-214ENST00000600840 EVA1CP58658 441 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms