RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ONECUT3O60422 494 aaPredicted RBP18.17■□□□□ 0.5
UPF1-208ENST00000600012 PRR36Q9H6K5 1346 aa18.17■□□□□ 0.5
UPF1-208ENST00000600012 COL14A1Q05707 1796 aaKnown RBP18.17■□□□□ 0.5
UPF1-208ENST00000600012 FAM83GA6ND36 823 aa18.16■□□□□ 0.5
UPF1-208ENST00000600012 WASLO00401 505 aaPredicted RBP18.16■□□□□ 0.5
UPF1-208ENST00000600012 TONSLQ96HA7 1378 aa18.16■□□□□ 0.5
UPF1-208ENST00000600012 CRYBG1Q9Y4K1 1723 aa18.15■□□□□ 0.5
UPF1-208ENST00000600012 SF3B2Q13435 895 aaKnown RBP18.15■□□□□ 0.5
UPF1-208ENST00000600012 KRT27Q7Z3Y8 459 aa18.13■□□□□ 0.49
UPF1-208ENST00000600012 NGDNQ8NEJ9 315 aaKnown RBP18.12■□□□□ 0.49
UPF1-208ENST00000600012 BTG4Q9NY30 223 aa18.12■□□□□ 0.49
UPF1-208ENST00000600012 ATP7BP35670 1465 aa18.12■□□□□ 0.49
UPF1-208ENST00000600012 A0A0G2JS52 829 aa18.11■□□□□ 0.49
UPF1-208ENST00000600012 MYT1Q01538 1121 aa18.11■□□□□ 0.49
UPF1-208ENST00000600012 DEFB132Q7Z7B7 95 aa18.11■□□□□ 0.49
UPF1-208ENST00000600012 SRCAPQ6ZRS2 3230 aa18.11■□□□□ 0.49
UPF1-208ENST00000600012 KIAA1210Q9ULL0 1709 aa18.09■□□□□ 0.49
UPF1-208ENST00000600012 PAK3O75914 559 aaPredicted RBP18.09■□□□□ 0.49
UPF1-208ENST00000600012 FAM98CQ17RN3 349 aaKnown RBP18.09■□□□□ 0.49
UPF1-208ENST00000600012 TIMELESSQ9UNS1 1208 aa18.08■□□□□ 0.48
UPF1-208ENST00000600012 TOPAZ1Q8N9V7 1692 aa18.07■□□□□ 0.48
UPF1-208ENST00000600012 NUDT16Q96DE0 195 aaKnown RBP18.07■□□□□ 0.48
UPF1-208ENST00000600012 PRDM11Q9NQV5 511 aa18.07■□□□□ 0.48
UPF1-208ENST00000600012 PHRF1Q9P1Y6 1649 aaKnown RBP18.07■□□□□ 0.48
UPF1-208ENST00000600012 THSD7AQ9UPZ6 1657 aa18.06■□□□□ 0.48
UPF1-208ENST00000600012 SPATA31A5Q5VU36 1347 aa18.06■□□□□ 0.48
UPF1-208ENST00000600012 SPATA31A7Q8IWB4 1347 aa18.06■□□□□ 0.48
UPF1-208ENST00000600012 RGPD1P0DJD0 1748 aa18.06■□□□□ 0.48
UPF1-208ENST00000600012 BAG6P46379 1132 aa18.05■□□□□ 0.48
UPF1-208ENST00000600012 L3MBTL2Q969R5 705 aa18.04■□□□□ 0.48
UPF1-208ENST00000600012 POLR3AO14802 1390 aaPredicted RBP18.04■□□□□ 0.48
UPF1-208ENST00000600012 CDK19Q9BWU1 502 aa18.03■□□□□ 0.48
UPF1-208ENST00000600012 KIAA0232Q92628 1395 aa18.03■□□□□ 0.48
UPF1-208ENST00000600012 LRP5O75197 1615 aa18.02■□□□□ 0.48
UPF1-208ENST00000600012 CCDC61Q9Y6R9 512 aa18.01■□□□□ 0.47
UPF1-208ENST00000600012 ACEP12821 1306 aa18■□□□□ 0.47
UPF1-208ENST00000600012 TNS1Q9HBL0 1735 aaKnown RBP18■□□□□ 0.47
UPF1-208ENST00000600012 SPATA31A1Q5TZJ5 1347 aa17.99■□□□□ 0.47
UPF1-208ENST00000600012 NRKQ7Z2Y5 1582 aa17.99■□□□□ 0.47
UPF1-208ENST00000600012 PLEKHG3A1L390 1219 aa17.98■□□□□ 0.47
UPF1-208ENST00000600012 CHRNA2Q15822 529 aa17.98■□□□□ 0.47
UPF1-208ENST00000600012 NBPF8Q3BBV2 869 aa17.98■□□□□ 0.47
UPF1-208ENST00000600012 DISP2A7MBM2 1401 aa17.98■□□□□ 0.47
UPF1-208ENST00000600012 ZC3H6P61129 1189 aaKnown RBP17.97■□□□□ 0.47
UPF1-208ENST00000600012 NUTM2GQ5VZR2 741 aa17.97■□□□□ 0.47
UPF1-208ENST00000600012 FAM182BQ5T319 152 aa17.96■□□□□ 0.47
UPF1-208ENST00000600012 STRN4Q9NRL3 753 aa17.96■□□□□ 0.47
UPF1-208ENST00000600012 EN1Q05925 392 aaPredicted RBP17.95■□□□□ 0.46
UPF1-208ENST00000600012 NBPF1Q3BBV0 1214 aa17.95■□□□□ 0.46
UPF1-208ENST00000600012 ABTB2Q8N961 1025 aa17.95■□□□□ 0.46
UPF1-208ENST00000600012 SSH2Q76I76 1423 aa17.95■□□□□ 0.46
UPF1-208ENST00000600012 CPDO75976 1380 aa17.94■□□□□ 0.46
UPF1-208ENST00000600012 LMO7Q8WWI1 1683 aa17.94■□□□□ 0.46
UPF1-208ENST00000600012 QRICH2Q9H0J4 1663 aa17.94■□□□□ 0.46
UPF1-208ENST00000600012 PSDA5PKW4 1024 aaPredicted RBP17.94■□□□□ 0.46
UPF1-208ENST00000600012 PPIP5K1Q6PFW1 1433 aa17.94■□□□□ 0.46
UPF1-208ENST00000600012 USP19O94966 1318 aa17.94■□□□□ 0.46
UPF1-208ENST00000600012 CENPJQ9HC77 1338 aaPredicted RBP17.94■□□□□ 0.46
UPF1-208ENST00000600012 SRPK2P78362 688 aaKnown RBP17.93■□□□□ 0.46
UPF1-208ENST00000600012 CAMTA1Q9Y6Y1 1673 aa17.93■□□□□ 0.46
UPF1-208ENST00000600012 BRD4O60885 1362 aaPredicted RBP17.92■□□□□ 0.46
UPF1-208ENST00000600012 TRPM1Q7Z4N2 1603 aa17.92■□□□□ 0.46
UPF1-208ENST00000600012 EVA1CP58658 441 aa17.92■□□□□ 0.46
UPF1-208ENST00000600012 FAM196AQ6ZSG2 479 aa17.92■□□□□ 0.46
UPF1-208ENST00000600012 BARGINQ6ZT62 677 aa17.92■□□□□ 0.46
UPF1-208ENST00000600012 NLRP13Q86W25 1043 aa17.91■□□□□ 0.46
UPF1-208ENST00000600012 USP35Q9P2H5 1018 aa17.9■□□□□ 0.46
UPF1-208ENST00000600012 TRIM37O94972 964 aa17.89■□□□□ 0.45
UPF1-208ENST00000600012 PARD3Q8TEW0 1356 aa17.89■□□□□ 0.45
UPF1-208ENST00000600012 GCP02774 474 aa17.88■□□□□ 0.45
UPF1-208ENST00000600012 PDE3BQ13370 1112 aa17.88■□□□□ 0.45
UPF1-208ENST00000600012 LARP1Q6PKG0 1096 aaKnown RBP17.88■□□□□ 0.45
UPF1-208ENST00000600012 TCP11L2Q8N4U5 519 aa17.88■□□□□ 0.45
UPF1-208ENST00000600012 CABP2Q9NPB3 220 aa17.88■□□□□ 0.45
UPF1-208ENST00000600012 PARP4Q9UKK3 1724 aaKnown RBP17.87■□□□□ 0.45
UPF1-208ENST00000600012 R3HDM1Q15032 1099 aaKnown RBP17.87■□□□□ 0.45
UPF1-208ENST00000600012 EZH2Q15910 746 aaKnown RBP17.87■□□□□ 0.45
UPF1-208ENST00000600012 THRAP3Q9Y2W1 955 aaKnown RBP17.87■□□□□ 0.45
UPF1-208ENST00000600012 USP6P35125 1406 aa17.87■□□□□ 0.45
UPF1-208ENST00000600012 COL5A2P05997 1499 aaPredicted RBP17.87■□□□□ 0.45
UPF1-208ENST00000600012 CAMKK2Q96RR4 588 aa17.86■□□□□ 0.45
UPF1-208ENST00000600012 RREB1Q92766 1687 aa17.86■□□□□ 0.45
UPF1-208ENST00000600012 SLIT3O75094 1523 aa17.85■□□□□ 0.45
UPF1-208ENST00000600012 APBA3O96018 575 aa17.85■□□□□ 0.45
UPF1-208ENST00000600012 CABP1Q9NZU7 370 aa17.84■□□□□ 0.45
UPF1-208ENST00000600012 CRB1P82279 1406 aa17.83■□□□□ 0.45
UPF1-208ENST00000600012 NLRP6P59044 892 aa17.83■□□□□ 0.44
UPF1-208ENST00000600012 NUP188Q5SRE5 1749 aa17.83■□□□□ 0.44
UPF1-208ENST00000600012 PIK3C2AO00443 1686 aa17.83■□□□□ 0.44
UPF1-208ENST00000600012 AATKQ6ZMQ8 1374 aa17.82■□□□□ 0.44
UPF1-208ENST00000600012 EVC2Q86UK5 1308 aa17.82■□□□□ 0.44
UPF1-208ENST00000600012 C11orf95C9JLR9 678 aaPredicted RBP17.81■□□□□ 0.44
UPF1-208ENST00000600012 COL18A1P39060 1754 aa17.8■□□□□ 0.44
UPF1-208ENST00000600012 AKAP12Q02952 1782 aa17.8■□□□□ 0.44
UPF1-208ENST00000600012 WNK3Q9BYP7 1800 aa17.79■□□□□ 0.44
UPF1-208ENST00000600012 ZBTB7CA1YPR0 619 aa17.79■□□□□ 0.44
UPF1-208ENST00000600012 LRRC37A3O60309 1634 aa17.79■□□□□ 0.44
UPF1-208ENST00000600012 PEAK1Q9H792 1746 aa17.78■□□□□ 0.44
UPF1-208ENST00000600012 SBF2Q86WG5 1849 aa17.78■□□□□ 0.44
UPF1-208ENST00000600012 OVOS2A0A0G2JMS6 1433 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms