RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CENPJQ9HC77 1338 aaPredicted RBP14.11□□□□□ -0.15
VRK3-216ENST00000599342 TOPAZ1Q8N9V7 1692 aa14.1□□□□□ -0.15
VRK3-216ENST00000599342 A0A0G2JS52 829 aa14.1□□□□□ -0.15
VRK3-216ENST00000599342 SRPK2P78362 688 aaKnown RBP14.1□□□□□ -0.15
VRK3-216ENST00000599342 MYT1Q01538 1121 aa14.1□□□□□ -0.15
VRK3-216ENST00000599342 SEPT12Q8IYM1 358 aa14.1□□□□□ -0.15
VRK3-216ENST00000599342 POLR3AO14802 1390 aaPredicted RBP14.09□□□□□ -0.15
VRK3-216ENST00000599342 L3MBTL2Q969R5 705 aa14.09□□□□□ -0.15
VRK3-216ENST00000599342 PRDM11Q9NQV5 511 aa14.09□□□□□ -0.15
VRK3-216ENST00000599342 NRAPQ86VF7 1730 aa14.09□□□□□ -0.15
VRK3-216ENST00000599342 ACEP12821 1306 aa14.09□□□□□ -0.15
VRK3-216ENST00000599342 CRYBG1Q9Y4K1 1723 aa14.08□□□□□ -0.16
VRK3-216ENST00000599342 NEUROD1Q13562 356 aa14.08□□□□□ -0.16
VRK3-216ENST00000599342 SIN3AQ96ST3 1273 aa14.08□□□□□ -0.16
VRK3-216ENST00000599342 BLMP54132 1417 aaPredicted RBP14.07□□□□□ -0.16
VRK3-216ENST00000599342 PLEKHG3A1L390 1219 aa14.07□□□□□ -0.16
VRK3-216ENST00000599342 NBPF8Q3BBV2 869 aa14.07□□□□□ -0.16
VRK3-216ENST00000599342 QRICH2Q9H0J4 1663 aa14.07□□□□□ -0.16
VRK3-216ENST00000599342 PPIP5K1Q6PFW1 1433 aa14.07□□□□□ -0.16
VRK3-216ENST00000599342 ONECUT3O60422 494 aaPredicted RBP14.06□□□□□ -0.16
VRK3-216ENST00000599342 SF3B2Q13435 895 aaKnown RBP14.06□□□□□ -0.16
VRK3-216ENST00000599342 FAM98CQ17RN3 349 aaKnown RBP14.06□□□□□ -0.16
VRK3-216ENST00000599342 NUTM2GQ5VZR2 741 aa14.06□□□□□ -0.16
VRK3-216ENST00000599342 KRT27Q7Z3Y8 459 aa14.06□□□□□ -0.16
VRK3-216ENST00000599342 ROCK2O75116 1388 aaKnown RBP14.06□□□□□ -0.16
VRK3-216ENST00000599342 KIAA0232Q92628 1395 aa14.06□□□□□ -0.16
VRK3-216ENST00000599342 BRWD3Q6RI45 1802 aa14.06□□□□□ -0.16
VRK3-216ENST00000599342 EP400Q96L91 3159 aa14.06□□□□□ -0.16
VRK3-216ENST00000599342 PHRF1Q9P1Y6 1649 aaKnown RBP14.05□□□□□ -0.16
VRK3-216ENST00000599342 ABTB2Q8N961 1025 aa14.05□□□□□ -0.16
VRK3-216ENST00000599342 CABP2Q9NPB3 220 aa14.05□□□□□ -0.16
VRK3-216ENST00000599342 ZRANB1Q9UGI0 708 aa14.05□□□□□ -0.16
VRK3-216ENST00000599342 TRPM1Q7Z4N2 1603 aa14.04□□□□□ -0.16
VRK3-216ENST00000599342 ZC3H6P61129 1189 aaKnown RBP14.03□□□□□ -0.16
VRK3-216ENST00000599342 CHRNA2Q15822 529 aa14.03□□□□□ -0.16
VRK3-216ENST00000599342 SPATA31A5Q5VU36 1347 aa14.03□□□□□ -0.16
VRK3-216ENST00000599342 EVC2Q86UK5 1308 aa14.03□□□□□ -0.16
VRK3-216ENST00000599342 SPATA31A7Q8IWB4 1347 aa14.03□□□□□ -0.16
VRK3-216ENST00000599342 BRD4O60885 1362 aaPredicted RBP14.02□□□□□ -0.17
VRK3-216ENST00000599342 STRN4Q9NRL3 753 aa14.02□□□□□ -0.17
VRK3-216ENST00000599342 NRKQ7Z2Y5 1582 aa14.01□□□□□ -0.17
VRK3-216ENST00000599342 NLRP13Q86W25 1043 aa14.01□□□□□ -0.17
VRK3-216ENST00000599342 USP19O94966 1318 aa14□□□□□ -0.17
VRK3-216ENST00000599342 EVA1CP58658 441 aa14□□□□□ -0.17
VRK3-216ENST00000599342 CABP1Q9NZU7 370 aa14□□□□□ -0.17
VRK3-216ENST00000599342 USP6P35125 1406 aa13.99□□□□□ -0.17
VRK3-216ENST00000599342 SPATA31A1Q5TZJ5 1347 aa13.99□□□□□ -0.17
VRK3-216ENST00000599342 DEFB132Q7Z7B7 95 aa13.99□□□□□ -0.17
VRK3-216ENST00000599342 CPDO75976 1380 aa13.98□□□□□ -0.17
VRK3-216ENST00000599342 BAG6P46379 1132 aa13.98□□□□□ -0.17
VRK3-216ENST00000599342 SSH2Q76I76 1423 aa13.98□□□□□ -0.17
VRK3-216ENST00000599342 THSD7AQ9UPZ6 1657 aa13.98□□□□□ -0.17
VRK3-216ENST00000599342 GCP02774 474 aa13.97□□□□□ -0.17
VRK3-216ENST00000599342 NLRP6P59044 892 aa13.97□□□□□ -0.17
VRK3-216ENST00000599342 USP35Q9P2H5 1018 aa13.97□□□□□ -0.17
VRK3-216ENST00000599342 TONSLQ96HA7 1378 aa13.96□□□□□ -0.17
VRK3-216ENST00000599342 ZBTB7CA1YPR0 619 aa13.95□□□□□ -0.18
VRK3-216ENST00000599342 CARD11Q9BXL7 1154 aa13.95□□□□□ -0.18
VRK3-216ENST00000599342 LMO7Q8WWI1 1683 aa13.95□□□□□ -0.18
VRK3-216ENST00000599342 CAMTA1Q9Y6Y1 1673 aa13.95□□□□□ -0.18
VRK3-216ENST00000599342 FAM182BQ5T319 152 aa13.94□□□□□ -0.18
VRK3-216ENST00000599342 LARP1Q6PKG0 1096 aaKnown RBP13.94□□□□□ -0.18
VRK3-216ENST00000599342 BARGINQ6ZT62 677 aa13.94□□□□□ -0.18
VRK3-216ENST00000599342 ZNF692Q9BU19 519 aaPredicted RBP13.94□□□□□ -0.18
VRK3-216ENST00000599342 RGPD1P0DJD0 1748 aa13.93□□□□□ -0.18
VRK3-216ENST00000599342 TCP11L2Q8N4U5 519 aa13.93□□□□□ -0.18
VRK3-216ENST00000599342 SLIT3O75094 1523 aa13.93□□□□□ -0.18
VRK3-216ENST00000599342 COL5A2P05997 1499 aaPredicted RBP13.93□□□□□ -0.18
VRK3-216ENST00000599342 PIK3C2AO00443 1686 aa13.92□□□□□ -0.18
VRK3-216ENST00000599342 FAM196AQ6ZSG2 479 aa13.92□□□□□ -0.18
VRK3-216ENST00000599342 THRAP3Q9Y2W1 955 aaKnown RBP13.92□□□□□ -0.18
VRK3-216ENST00000599342 SBNO2Q9Y2G9 1366 aa13.92□□□□□ -0.18
VRK3-216ENST00000599342 TTC21AQ8NDW8 1320 aa13.91□□□□□ -0.18
VRK3-216ENST00000599342 PDE3BQ13370 1112 aa13.91□□□□□ -0.18
VRK3-216ENST00000599342 AATKQ6ZMQ8 1374 aa13.91□□□□□ -0.18
VRK3-216ENST00000599342 TTC21BQ7Z4L5 1316 aa13.9□□□□□ -0.18
VRK3-216ENST00000599342 EN1Q05925 392 aaPredicted RBP13.9□□□□□ -0.18
VRK3-216ENST00000599342 KCNH5Q8NCM2 988 aa13.9□□□□□ -0.18
VRK3-216ENST00000599342 KTN1Q86UP2 1357 aaKnown RBP13.9□□□□□ -0.18
VRK3-216ENST00000599342 AKAP12Q02952 1782 aa13.9□□□□□ -0.18
VRK3-216ENST00000599342 CRB1P82279 1406 aa13.9□□□□□ -0.19
VRK3-216ENST00000599342 CPSF1Q10570 1443 aaKnown RBP13.9□□□□□ -0.19
VRK3-216ENST00000599342 TRIM26Q12899 539 aaPredicted RBP13.89□□□□□ -0.19
VRK3-216ENST00000599342 DISP2A7MBM2 1401 aa13.89□□□□□ -0.19
VRK3-216ENST00000599342 SOX12O15370 315 aa13.88□□□□□ -0.19
VRK3-216ENST00000599342 TRIM37O94972 964 aa13.88□□□□□ -0.19
VRK3-216ENST00000599342 TNS1Q9HBL0 1735 aaKnown RBP13.87□□□□□ -0.19
VRK3-216ENST00000599342 TOM1L2Q6ZVM7 507 aa13.87□□□□□ -0.19
VRK3-216ENST00000599342 TMC1Q8TDI8 760 aa13.87□□□□□ -0.19
VRK3-216ENST00000599342 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
VRK3-216ENST00000599342 MON2Q7Z3U7 1717 aa13.86□□□□□ -0.19
VRK3-216ENST00000599342 PARP4Q9UKK3 1724 aaKnown RBP13.85□□□□□ -0.19
VRK3-216ENST00000599342 PSDA5PKW4 1024 aaPredicted RBP13.85□□□□□ -0.19
VRK3-216ENST00000599342 APBA3O96018 575 aa13.85□□□□□ -0.19
VRK3-216ENST00000599342 CSB-PGBD3P0DP91 1061 aa13.85□□□□□ -0.19
VRK3-216ENST00000599342 ARHGEF25Q86VW2 580 aa13.85□□□□□ -0.19
VRK3-216ENST00000599342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.85□□□□□ -0.19
VRK3-216ENST00000599342 WDR17Q8IZU2 1322 aa13.85□□□□□ -0.19
VRK3-216ENST00000599342 C11orf95C9JLR9 678 aaPredicted RBP13.84□□□□□ -0.19
VRK3-216ENST00000599342 EZH2Q15910 746 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms