RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 NBPF8Q3BBV2 869 aa17.22■□□□□ 0.35
SHKBP1-213ENST00000597325 NBPF14Q5TI25 921 aa17.22■□□□□ 0.35
SHKBP1-213ENST00000597325 FAM196AQ6ZSG2 479 aa17.22■□□□□ 0.35
SHKBP1-213ENST00000597325 BTG4Q9NY30 223 aa17.22■□□□□ 0.35
SHKBP1-213ENST00000597325 FMN2Q9NZ56 1722 aa17.21■□□□□ 0.35
SHKBP1-213ENST00000597325 IFT172Q9UG01 1749 aa17.21■□□□□ 0.35
SHKBP1-213ENST00000597325 PPLO60437 1756 aa17.2■□□□□ 0.34
SHKBP1-213ENST00000597325 NRKQ7Z2Y5 1582 aa17.19■□□□□ 0.34
SHKBP1-213ENST00000597325 SBNO1A3KN83 1393 aa17.19■□□□□ 0.34
SHKBP1-213ENST00000597325 DCAF11Q8TEB1 546 aa17.19■□□□□ 0.34
SHKBP1-213ENST00000597325 COL14A1Q05707 1796 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-213ENST00000597325 RPGRIP1LQ68CZ1 1315 aa17.19■□□□□ 0.34
SHKBP1-213ENST00000597325 CASZ1Q86V15 1759 aa17.18■□□□□ 0.34
SHKBP1-213ENST00000597325 VGFO15240 615 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-213ENST00000597325 ARHGEF10O15013 1369 aa17.17■□□□□ 0.34
SHKBP1-213ENST00000597325 TECPR2O15040 1411 aa17.17■□□□□ 0.34
SHKBP1-213ENST00000597325 PLEKHG5O94827 1062 aa17.17■□□□□ 0.34
SHKBP1-213ENST00000597325 STAC3Q96MF2 364 aa17.17■□□□□ 0.34
SHKBP1-213ENST00000597325 KDM2AQ9Y2K7 1162 aa17.17■□□□□ 0.34
SHKBP1-213ENST00000597325 PSME1Q06323 249 aa17.16■□□□□ 0.34
SHKBP1-213ENST00000597325 WAPLQ7Z5K2 1190 aa17.15■□□□□ 0.34
SHKBP1-213ENST00000597325 MYOM1P52179 1685 aa17.15■□□□□ 0.34
SHKBP1-213ENST00000597325 RGPD8O14715 1765 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-213ENST00000597325 NRXN1Q9ULB1 1477 aa17.13■□□□□ 0.33
SHKBP1-213ENST00000597325 PLEKHH1Q9ULM0 1364 aa17.13■□□□□ 0.33
SHKBP1-213ENST00000597325 PTGER2P43116 358 aa17.12■□□□□ 0.33
SHKBP1-213ENST00000597325 PHF8Q9UPP1 1060 aa17.12■□□□□ 0.33
SHKBP1-213ENST00000597325 SPATA31A1Q5TZJ5 1347 aa17.12■□□□□ 0.33
SHKBP1-213ENST00000597325 GIGYF1O75420 1035 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-213ENST00000597325 LMOD2Q6P5Q4 547 aa17.11■□□□□ 0.33
SHKBP1-213ENST00000597325 SYT17Q9BSW7 474 aa17.1■□□□□ 0.33
SHKBP1-213ENST00000597325 PDGFDQ9GZP0 370 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-213ENST00000597325 TRPM1Q7Z4N2 1603 aa17.09■□□□□ 0.33
SHKBP1-213ENST00000597325 TRPM3Q9HCF6 1732 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-213ENST00000597325 KNDC1Q76NI1 1749 aa17.08■□□□□ 0.32
SHKBP1-213ENST00000597325 CRYBG1Q9Y4K1 1723 aa17.08■□□□□ 0.32
SHKBP1-213ENST00000597325 ALS2Q96Q42 1657 aa17.08■□□□□ 0.32
SHKBP1-213ENST00000597325 PIK3C2GO75747 1445 aa17.08■□□□□ 0.32
SHKBP1-213ENST00000597325 ANO8Q9HCE9 1232 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-213ENST00000597325 RGPD3A6NKT7 1758 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-213ENST00000597325 RGPD4Q7Z3J3 1758 aa17.07■□□□□ 0.32
SHKBP1-213ENST00000597325 ABCC11Q96J66 1382 aa17.07■□□□□ 0.32
SHKBP1-213ENST00000597325 ADGRF5Q8IZF2 1346 aa17.07■□□□□ 0.32
SHKBP1-213ENST00000597325 FHDC1Q9C0D6 1143 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-213ENST00000597325 KIAA1210Q9ULL0 1709 aa17.07■□□□□ 0.32
SHKBP1-213ENST00000597325 ROCK2O75116 1388 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-213ENST00000597325 ZBTB7AO95365 584 aa17.04■□□□□ 0.32
SHKBP1-213ENST00000597325 STK26Q9P289 416 aa17.04■□□□□ 0.32
SHKBP1-213ENST00000597325 SHANK3Q9BYB0 1731 aa17.02■□□□□ 0.32
SHKBP1-213ENST00000597325 PDE3BQ13370 1112 aa17.02■□□□□ 0.32
SHKBP1-213ENST00000597325 BARGINQ6ZT62 677 aa17.02■□□□□ 0.32
SHKBP1-213ENST00000597325 SGIP1Q9BQI5 828 aa17.02■□□□□ 0.32
SHKBP1-213ENST00000597325 DLC1Q96QB1 1528 aa17.01■□□□□ 0.31
SHKBP1-213ENST00000597325 PLSCR1O15162 318 aa17.01■□□□□ 0.31
SHKBP1-213ENST00000597325 PRDM11Q9NQV5 511 aa17■□□□□ 0.31
SHKBP1-213ENST00000597325 ATF5Q9Y2D1 282 aaPredicted RBP17■□□□□ 0.31
SHKBP1-213ENST00000597325 CFAP70Q5T0N1 1121 aa16.98■□□□□ 0.31
SHKBP1-213ENST00000597325 PMFBP1Q8TBY8 1022 aa16.98■□□□□ 0.31
SHKBP1-213ENST00000597325 MAP3K5Q99683 1374 aa16.98■□□□□ 0.31
SHKBP1-213ENST00000597325 PEAK1Q9H792 1746 aa16.98■□□□□ 0.31
SHKBP1-213ENST00000597325 PROM2Q8N271 834 aa16.97■□□□□ 0.31
SHKBP1-213ENST00000597325 SIRT1Q96EB6 747 aa16.97■□□□□ 0.31
SHKBP1-213ENST00000597325 CARD11Q9BXL7 1154 aa16.97■□□□□ 0.31
SHKBP1-213ENST00000597325 C14orf93Q9H972 538 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-213ENST00000597325 GPRASP1Q5JY77 1395 aa16.97■□□□□ 0.31
SHKBP1-213ENST00000597325 SBF2Q86WG5 1849 aa16.96■□□□□ 0.31
SHKBP1-213ENST00000597325 TMEM132EQ6IEE7 984 aa16.96■□□□□ 0.31
SHKBP1-213ENST00000597325 STRN4Q9NRL3 753 aa16.96■□□□□ 0.31
SHKBP1-213ENST00000597325 USP35Q9P2H5 1018 aa16.96■□□□□ 0.31
SHKBP1-213ENST00000597325 KIAA0232Q92628 1395 aa16.96■□□□□ 0.31
SHKBP1-213ENST00000597325 YTHDC2Q9H6S0 1430 aaKnown RBP16.96■□□□□ 0.3
SHKBP1-213ENST00000597325 PARP4Q9UKK3 1724 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-213ENST00000597325 ADGRB1O14514 1584 aa16.94■□□□□ 0.3
SHKBP1-213ENST00000597325 CHRNA2Q15822 529 aa16.94■□□□□ 0.3
SHKBP1-213ENST00000597325 NBPF1Q3BBV0 1214 aa16.94■□□□□ 0.3
SHKBP1-213ENST00000597325 SSH2Q76I76 1423 aa16.94■□□□□ 0.3
SHKBP1-213ENST00000597325 ANKARQ7Z5J8 1434 aa16.94■□□□□ 0.3
SHKBP1-213ENST00000597325 EIF3AQ14152 1382 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-213ENST00000597325 USP47Q96K76 1375 aa16.93■□□□□ 0.3
SHKBP1-213ENST00000597325 C11orf95C9JLR9 678 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-213ENST00000597325 MTFR1LQ9H019 292 aa16.93■□□□□ 0.3
SHKBP1-213ENST00000597325 PCNTO95613 3336 aa16.93■□□□□ 0.3
SHKBP1-213ENST00000597325 EIF4G2P78344 907 aaKnown RBP eCLIP16.92■□□□□ 0.3
SHKBP1-213ENST00000597325 OVOS2A0A0G2JMS6 1433 aa16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 OVOS2A0A0J9YW53 1432 aa16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 OVOS2Q6IE36 1432 aa16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 PTF1AQ7RTS3 328 aa16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 TCP11L2Q8N4U5 519 aa16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 BCL11BQ9C0K0 894 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 PHRF1Q9P1Y6 1649 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-213ENST00000597325 HSPA6P17066 643 aa16.9■□□□□ 0.3
SHKBP1-213ENST00000597325 GPR162Q16538 588 aa16.9■□□□□ 0.3
SHKBP1-213ENST00000597325 SLC15A2Q16348 729 aa16.89■□□□□ 0.29
SHKBP1-213ENST00000597325 LARP1Q6PKG0 1096 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-213ENST00000597325 ARXQ96QS3 562 aa16.89■□□□□ 0.29
SHKBP1-213ENST00000597325 THRAP3Q9Y2W1 955 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-213ENST00000597325 HSPA5P11021 654 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-213ENST00000597325 LMO7Q8WWI1 1683 aa16.87■□□□□ 0.29
SHKBP1-213ENST00000597325 ARHGEF28Q8N1W1 1705 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-213ENST00000597325 ATP7BP35670 1465 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms