RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 QRICH2Q9H0J4 1663 aa15.18■□□□□ 0.02
LIG1-213ENST00000596672 ACEP12821 1306 aa15.17■□□□□ 0.02
LIG1-213ENST00000596672 NWD2Q9ULI1 1742 aa15.17■□□□□ 0.02
LIG1-213ENST00000596672 SRCAPQ6ZRS2 3230 aa15.17■□□□□ 0.02
LIG1-213ENST00000596672 EIF3AQ14152 1382 aaKnown RBP15.17■□□□□ 0.02
LIG1-213ENST00000596672 GPRASP1Q5JY77 1395 aa15.17■□□□□ 0.02
LIG1-213ENST00000596672 PLEKHG3A1L390 1219 aa15.17■□□□□ 0.02
LIG1-213ENST00000596672 CENPJQ9HC77 1338 aaPredicted RBP15.17■□□□□ 0.02
LIG1-213ENST00000596672 NUTM2GQ5VZR2 741 aa15.16■□□□□ 0.02
LIG1-213ENST00000596672 VPS72Q15906 364 aa15.15■□□□□ 0.02
LIG1-213ENST00000596672 CCDC61Q9Y6R9 512 aa15.15■□□□□ 0.02
LIG1-213ENST00000596672 PHRF1Q9P1Y6 1649 aaKnown RBP15.14■□□□□ 0.01
LIG1-213ENST00000596672 ONECUT3O60422 494 aaPredicted RBP15.14■□□□□ 0.01
LIG1-213ENST00000596672 PAK3O75914 559 aaPredicted RBP15.14■□□□□ 0.01
LIG1-213ENST00000596672 COL14A1Q05707 1796 aaKnown RBP15.12■□□□□ 0.01
LIG1-213ENST00000596672 HAP1P54257 671 aaPredicted RBP15.12■□□□□ 0.01
LIG1-213ENST00000596672 BTG4Q9NY30 223 aa15.12■□□□□ 0.01
LIG1-213ENST00000596672 PPIP5K1Q6PFW1 1433 aa15.11■□□□□ 0.01
LIG1-213ENST00000596672 CHRNA2Q15822 529 aa15.11■□□□□ 0.01
LIG1-213ENST00000596672 SEPT12Q8IYM1 358 aa15.11■□□□□ 0.01
LIG1-213ENST00000596672 CABP1Q9NZU7 370 aa15.11■□□□□ 0.01
LIG1-213ENST00000596672 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
LIG1-213ENST00000596672 KIAA0232Q92628 1395 aa15.11■□□□□ 0.01
LIG1-213ENST00000596672 SSH2Q76I76 1423 aa15.1■□□□□ 0.01
LIG1-213ENST00000596672 SRPK2P78362 688 aaKnown RBP15.1■□□□□ 0.01
LIG1-213ENST00000596672 ZC3H6P61129 1189 aaKnown RBP15.09■□□□□ 0.01
LIG1-213ENST00000596672 NRKQ7Z2Y5 1582 aa15.09■□□□□ 0.01
LIG1-213ENST00000596672 ROCK2O75116 1388 aaKnown RBP15.09■□□□□ 0.01
LIG1-213ENST00000596672 USP19O94966 1318 aa15.08■□□□□ 0
LIG1-213ENST00000596672 CAMTA1Q9Y6Y1 1673 aa15.07■□□□□ 0
LIG1-213ENST00000596672 SPATA31A5Q5VU36 1347 aa15.07■□□□□ 0
LIG1-213ENST00000596672 SPATA31A7Q8IWB4 1347 aa15.07■□□□□ 0
LIG1-213ENST00000596672 LMO7Q8WWI1 1683 aa15.06■□□□□ 0
LIG1-213ENST00000596672 TRIM26Q12899 539 aaPredicted RBP15.06■□□□□ 0
LIG1-213ENST00000596672 FAM98CQ17RN3 349 aaKnown RBP15.06■□□□□ 0
LIG1-213ENST00000596672 USP6P35125 1406 aa15.06■□□□□ 0
LIG1-213ENST00000596672 PIK3C2AO00443 1686 aa15.06■□□□□ 0
LIG1-213ENST00000596672 THSD7AQ9UPZ6 1657 aa15.06■□□□□ 0
LIG1-213ENST00000596672 FAM182BQ5T319 152 aa15.05■□□□□ -0
LIG1-213ENST00000596672 ABTB2Q8N961 1025 aa15.05■□□□□ -0
LIG1-213ENST00000596672 PRDM11Q9NQV5 511 aa15.05■□□□□ -0
LIG1-213ENST00000596672 CCDC9Q9Y3X0 531 aaKnown RBP15.05■□□□□ -0
LIG1-213ENST00000596672 AKAP12Q02952 1782 aa15.04■□□□□ -0
LIG1-213ENST00000596672 DEFB132Q7Z7B7 95 aa15.03■□□□□ -0
LIG1-213ENST00000596672 COL18A1P39060 1754 aa15.03■□□□□ -0
LIG1-213ENST00000596672 CD163L1Q9NR16 1453 aa15.02■□□□□ -0
LIG1-213ENST00000596672 CPSF1Q10570 1443 aaKnown RBP15.02■□□□□ -0
LIG1-213ENST00000596672 SPATA31A1Q5TZJ5 1347 aa15.02■□□□□ -0
LIG1-213ENST00000596672 EVC2Q86UK5 1308 aa15.02■□□□□ -0
LIG1-213ENST00000596672 GCP02774 474 aa15.02■□□□□ -0
LIG1-213ENST00000596672 SLIT3O75094 1523 aa15.02□□□□□ -0.01
LIG1-213ENST00000596672 CPDO75976 1380 aa15.01□□□□□ -0.01
LIG1-213ENST00000596672 LARP1Q6PKG0 1096 aaKnown RBP15.01□□□□□ -0.01
LIG1-213ENST00000596672 KRT27Q7Z3Y8 459 aa15.01□□□□□ -0.01
LIG1-213ENST00000596672 ZRANB1Q9UGI0 708 aa15.01□□□□□ -0.01
LIG1-213ENST00000596672 CARD11Q9BXL7 1154 aa15□□□□□ -0.01
LIG1-213ENST00000596672 STRN4Q9NRL3 753 aa15□□□□□ -0.01
LIG1-213ENST00000596672 TTC21BQ7Z4L5 1316 aa14.99□□□□□ -0.01
LIG1-213ENST00000596672 TESK2Q96S53 571 aa14.99□□□□□ -0.01
LIG1-213ENST00000596672 AXIN2Q9Y2T1 843 aa14.99□□□□□ -0.01
LIG1-213ENST00000596672 BLMP54132 1417 aaPredicted RBP14.99□□□□□ -0.01
LIG1-213ENST00000596672 SBNO2Q9Y2G9 1366 aa14.98□□□□□ -0.01
LIG1-213ENST00000596672 RGPD5Q99666 1765 aa14.98□□□□□ -0.01
LIG1-213ENST00000596672 NLRP6P59044 892 aa14.98□□□□□ -0.01
LIG1-213ENST00000596672 NLRP13Q86W25 1043 aa14.98□□□□□ -0.01
LIG1-213ENST00000596672 TONSLQ96HA7 1378 aa14.98□□□□□ -0.01
LIG1-213ENST00000596672 MON2Q7Z3U7 1717 aa14.97□□□□□ -0.01
LIG1-213ENST00000596672 CCDC125Q86Z20 511 aa14.97□□□□□ -0.01
LIG1-213ENST00000596672 BRD4O60885 1362 aaPredicted RBP14.97□□□□□ -0.01
LIG1-213ENST00000596672 COL5A2P05997 1499 aaPredicted RBP14.96□□□□□ -0.01
LIG1-213ENST00000596672 SLC12A5Q9H2X9 1139 aa14.96□□□□□ -0.01
LIG1-213ENST00000596672 USP35Q9P2H5 1018 aa14.96□□□□□ -0.01
LIG1-213ENST00000596672 NFAT5O94916 1531 aa14.95□□□□□ -0.02
LIG1-213ENST00000596672 TNS1Q9HBL0 1735 aaKnown RBP14.95□□□□□ -0.02
LIG1-213ENST00000596672 A0A0G2JS52 829 aa14.94□□□□□ -0.02
LIG1-213ENST00000596672 MYT1Q01538 1121 aa14.94□□□□□ -0.02
LIG1-213ENST00000596672 ST20-MTHFSA0A0A6YYL1 179 aa14.93□□□□□ -0.02
LIG1-213ENST00000596672 ARHGEF25Q86VW2 580 aa14.93□□□□□ -0.02
LIG1-213ENST00000596672 AATKQ6ZMQ8 1374 aa14.93□□□□□ -0.02
LIG1-213ENST00000596672 KTN1Q86UP2 1357 aaKnown RBP14.93□□□□□ -0.02
LIG1-213ENST00000596672 ZBTB7CA1YPR0 619 aa14.92□□□□□ -0.02
LIG1-213ENST00000596672 BARGINQ6ZT62 677 aa14.92□□□□□ -0.02
LIG1-213ENST00000596672 NME9Q86XW9 330 aa14.92□□□□□ -0.02
LIG1-213ENST00000596672 ZNF692Q9BU19 519 aaPredicted RBP14.92□□□□□ -0.02
LIG1-213ENST00000596672 USP54Q70EL1 1684 aa14.91□□□□□ -0.02
LIG1-213ENST00000596672 SOX12O15370 315 aa14.91□□□□□ -0.02
LIG1-213ENST00000596672 EVA1CP58658 441 aa14.91□□□□□ -0.02
LIG1-213ENST00000596672 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.91□□□□□ -0.02
LIG1-213ENST00000596672 USP31Q70CQ4 1352 aa14.9□□□□□ -0.02
LIG1-213ENST00000596672 EN1Q05925 392 aaPredicted RBP14.9□□□□□ -0.02
LIG1-213ENST00000596672 TCP11L2Q8N4U5 519 aa14.9□□□□□ -0.02
LIG1-213ENST00000596672 PARP4Q9UKK3 1724 aaKnown RBP14.89□□□□□ -0.03
LIG1-213ENST00000596672 A0A1W2PP64 1363 aa14.89□□□□□ -0.03
LIG1-213ENST00000596672 TTC21AQ8NDW8 1320 aa14.89□□□□□ -0.03
LIG1-213ENST00000596672 RGPD1P0DJD0 1748 aa14.89□□□□□ -0.03
LIG1-213ENST00000596672 PEAK1Q9H792 1746 aa14.89□□□□□ -0.03
LIG1-213ENST00000596672 TRIM37O94972 964 aa14.88□□□□□ -0.03
LIG1-213ENST00000596672 PTF1AQ7RTS3 328 aa14.88□□□□□ -0.03
LIG1-213ENST00000596672 TMC1Q8TDI8 760 aa14.88□□□□□ -0.03
LIG1-213ENST00000596672 CRB1P82279 1406 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms