RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 SLC24A1O60721 1099 aa20.48■□□□□ 0.87
VRK3-206ENST00000594090 CABLES1Q8TDN4 633 aa20.48■□□□□ 0.87
VRK3-206ENST00000594090 POTEAQ6S8J7 498 aa20.47■□□□□ 0.87
VRK3-206ENST00000594090 PUS7Q96PZ0 661 aaKnown RBP20.47■□□□□ 0.87
VRK3-206ENST00000594090 NRKQ7Z2Y5 1582 aa20.47■□□□□ 0.87
VRK3-206ENST00000594090 BRD4O60885 1362 aaPredicted RBP20.47■□□□□ 0.87
VRK3-206ENST00000594090 PHRF1Q9P1Y6 1649 aaKnown RBP20.46■□□□□ 0.87
VRK3-206ENST00000594090 PLEKHG5O94827 1062 aa20.46■□□□□ 0.87
VRK3-206ENST00000594090 ZNF772Q68DY9 489 aaPredicted RBP20.46■□□□□ 0.87
VRK3-206ENST00000594090 CPSF1Q10570 1443 aaKnown RBP20.46■□□□□ 0.87
VRK3-206ENST00000594090 MON2Q7Z3U7 1717 aa20.46■□□□□ 0.87
VRK3-206ENST00000594090 HAP1P54257 671 aaPredicted RBP20.45■□□□□ 0.86
VRK3-206ENST00000594090 NGLY1Q96IV0 654 aa20.45■□□□□ 0.86
VRK3-206ENST00000594090 SSH2Q76I76 1423 aa20.45■□□□□ 0.86
VRK3-206ENST00000594090 CD163L1Q9NR16 1453 aa20.44■□□□□ 0.86
VRK3-206ENST00000594090 TMF1P82094 1093 aa20.44■□□□□ 0.86
VRK3-206ENST00000594090 ZNF692Q9BU19 519 aaPredicted RBP20.43■□□□□ 0.86
VRK3-206ENST00000594090 PIK3C2AO00443 1686 aa20.43■□□□□ 0.86
VRK3-206ENST00000594090 NINLQ9Y2I6 1382 aa20.42■□□□□ 0.86
VRK3-206ENST00000594090 FNBP4Q8N3X1 1017 aaPredicted RBP20.42■□□□□ 0.86
VRK3-206ENST00000594090 ABTB2Q8N961 1025 aa20.42■□□□□ 0.86
VRK3-206ENST00000594090 TMC1Q8TDI8 760 aa20.42■□□□□ 0.86
VRK3-206ENST00000594090 PLCH1Q4KWH8 1693 aa20.41■□□□□ 0.86
VRK3-206ENST00000594090 KTN1Q86UP2 1357 aaKnown RBP20.41■□□□□ 0.86
VRK3-206ENST00000594090 NUTM2GQ5VZR2 741 aa20.41■□□□□ 0.86
VRK3-206ENST00000594090 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.4■□□□□ 0.86
VRK3-206ENST00000594090 EIF4G2P78344 907 aaKnown RBP eCLIP20.4■□□□□ 0.861e-6■■■□□ 15.7
VRK3-206ENST00000594090 SLC12A5Q9H2X9 1139 aa20.4■□□□□ 0.86
VRK3-206ENST00000594090 SLIT2O94813 1529 aa20.4■□□□□ 0.86
VRK3-206ENST00000594090 USP21Q9UK80 565 aa20.39■□□□□ 0.85
VRK3-206ENST00000594090 USP19O94966 1318 aa20.39■□□□□ 0.85
VRK3-206ENST00000594090 BCL9LQ86UU0 1499 aa20.39■□□□□ 0.85
VRK3-206ENST00000594090 A0A1W2PP64 1363 aa20.38■□□□□ 0.85
VRK3-206ENST00000594090 NWD2Q9ULI1 1742 aa20.38■□□□□ 0.85
VRK3-206ENST00000594090 TTC21BQ7Z4L5 1316 aa20.38■□□□□ 0.85
VRK3-206ENST00000594090 COL14A1Q05707 1796 aaKnown RBP20.37■□□□□ 0.85
VRK3-206ENST00000594090 HSPA5P11021 654 aaKnown RBP20.37■□□□□ 0.85
VRK3-206ENST00000594090 CDCA8Q53HL2 280 aa20.37■□□□□ 0.85
VRK3-206ENST00000594090 HDGFL2Q7Z4V5 671 aaPredicted RBP20.37■□□□□ 0.85
VRK3-206ENST00000594090 MYOM1P52179 1685 aa20.37■□□□□ 0.85
VRK3-206ENST00000594090 TERF2IPQ9NYB0 399 aa20.36■□□□□ 0.85
VRK3-206ENST00000594090 TTC21AQ8NDW8 1320 aa20.36■□□□□ 0.85
VRK3-206ENST00000594090 ATRNO75882 1429 aa20.36■□□□□ 0.85
VRK3-206ENST00000594090 EDC4Q6P2E9 1401 aaKnown RBP20.36■□□□□ 0.85
VRK3-206ENST00000594090 NLRP13Q86W25 1043 aa20.36■□□□□ 0.85
VRK3-206ENST00000594090 SLIT3O75094 1523 aa20.35■□□□□ 0.85
VRK3-206ENST00000594090 NRAPQ86VF7 1730 aa20.35■□□□□ 0.85
VRK3-206ENST00000594090 QTRT2Q9H974 415 aaKnown RBP20.35■□□□□ 0.85
VRK3-206ENST00000594090 USP54Q70EL1 1684 aa20.34■□□□□ 0.85
VRK3-206ENST00000594090 ANKRD36BQ8N2N9 1353 aa20.34■□□□□ 0.85
VRK3-206ENST00000594090 FAM83GA6ND36 823 aa20.33■□□□□ 0.84
VRK3-206ENST00000594090 NLRP6P59044 892 aa20.33■□□□□ 0.84
VRK3-206ENST00000594090 TRPC5Q9UL62 973 aaPredicted RBP20.33■□□□□ 0.84
VRK3-206ENST00000594090 KIAA0232Q92628 1395 aa20.33■□□□□ 0.84
VRK3-206ENST00000594090 RXRBP28702 533 aa20.32■□□□□ 0.84
VRK3-206ENST00000594090 UNC5CLQ8IV45 518 aa20.32■□□□□ 0.84
VRK3-206ENST00000594090 CDK12Q9NYV4 1490 aaPredicted RBP20.32■□□□□ 0.84
VRK3-206ENST00000594090 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.31■□□□□ 0.84
VRK3-206ENST00000594090 PRDM11Q9NQV5 511 aa20.31■□□□□ 0.84
VRK3-206ENST00000594090 CPDO75976 1380 aa20.3■□□□□ 0.84
VRK3-206ENST00000594090 GCP02774 474 aa20.3■□□□□ 0.84
VRK3-206ENST00000594090 RBM6P78332 1123 aaKnown RBP20.3■□□□□ 0.84
VRK3-206ENST00000594090 ZC3H6P61129 1189 aaKnown RBP20.29■□□□□ 0.84
VRK3-206ENST00000594090 LMO7Q8WWI1 1683 aa20.28■□□□□ 0.84
VRK3-206ENST00000594090 USP31Q70CQ4 1352 aa20.28■□□□□ 0.84
VRK3-206ENST00000594090 NME9Q86XW9 330 aa20.27■□□□□ 0.84
VRK3-206ENST00000594090 BTG4Q9NY30 223 aa20.27■□□□□ 0.84
VRK3-206ENST00000594090 RGS12O14924 1447 aa20.27■□□□□ 0.84
VRK3-206ENST00000594090 GLI3P10071 1580 aa20.27■□□□□ 0.83
VRK3-206ENST00000594090 SOCS7O14512 581 aa20.27■□□□□ 0.83
VRK3-206ENST00000594090 CHRNA2Q15822 529 aa20.27■□□□□ 0.83
VRK3-206ENST00000594090 NFAT5O94916 1531 aa20.26■□□□□ 0.83
VRK3-206ENST00000594090 VPS72Q15906 364 aa20.25■□□□□ 0.83
VRK3-206ENST00000594090 GJD4Q96KN9 370 aaPredicted RBP20.25■□□□□ 0.83
VRK3-206ENST00000594090 ZRANB1Q9UGI0 708 aa20.25■□□□□ 0.83
VRK3-206ENST00000594090 OVOS2A0A0J9YW53 1432 aa20.25■□□□□ 0.83
VRK3-206ENST00000594090 OVOS2Q6IE36 1432 aa20.25■□□□□ 0.83
VRK3-206ENST00000594090 KCNH5Q8NCM2 988 aa20.23■□□□□ 0.83
VRK3-206ENST00000594090 POLR3GLQ9BT43 218 aa20.23■□□□□ 0.83
VRK3-206ENST00000594090 CAMTA1Q9Y6Y1 1673 aa20.23■□□□□ 0.83
VRK3-206ENST00000594090 KIF20BQ96Q89 1820 aa20.22■□□□□ 0.83
VRK3-206ENST00000594090 COL18A1P39060 1754 aa20.21■□□□□ 0.83
VRK3-206ENST00000594090 SOX12O15370 315 aa20.21■□□□□ 0.83
VRK3-206ENST00000594090 CCDC9Q9Y3X0 531 aaKnown RBP20.2■□□□□ 0.82
VRK3-206ENST00000594090 AATKQ6ZMQ8 1374 aa20.2■□□□□ 0.82
VRK3-206ENST00000594090 ZBTB7CA1YPR0 619 aa20.19■□□□□ 0.82
VRK3-206ENST00000594090 C11orf95C9JLR9 678 aaPredicted RBP20.19■□□□□ 0.82
VRK3-206ENST00000594090 NSD3Q9BZ95 1437 aa20.19■□□□□ 0.82
VRK3-206ENST00000594090 LTN1O94822 1766 aa20.19■□□□□ 0.82
VRK3-206ENST00000594090 COL5A2P05997 1499 aaPredicted RBP20.19■□□□□ 0.82
VRK3-206ENST00000594090 ARHGEF25Q86VW2 580 aa20.19■□□□□ 0.82
VRK3-206ENST00000594090 CARD14Q9BXL6 1004 aa20.19■□□□□ 0.82
VRK3-206ENST00000594090 ABCC6O95255 1503 aa20.18■□□□□ 0.82
VRK3-206ENST00000594090 STRN4Q9NRL3 753 aa20.17■□□□□ 0.82
VRK3-206ENST00000594090 SPATA31A5Q5VU36 1347 aa20.16■□□□□ 0.82
VRK3-206ENST00000594090 SPATA31A7Q8IWB4 1347 aa20.16■□□□□ 0.82
VRK3-206ENST00000594090 COG3Q96JB2 828 aa20.16■□□□□ 0.82
VRK3-206ENST00000594090 RGPD5Q99666 1765 aa20.16■□□□□ 0.82
VRK3-206ENST00000594090 FYB1O15117 783 aa20.15■□□□□ 0.82
VRK3-206ENST00000594090 KIF7Q2M1P5 1343 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms