RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 NRAPQ86VF7 1730 aa34.78■■■■□ 3.16
LSM4-202ENST00000593564 PAK3O75914 559 aaPredicted RBP34.78■■■■□ 3.16
LSM4-202ENST00000593564 BTG4Q9NY30 223 aa34.78■■■■□ 3.16
LSM4-202ENST00000593564 KIAA1210Q9ULL0 1709 aa34.78■■■■□ 3.16
LSM4-202ENST00000593564 COL14A1Q05707 1796 aaKnown RBP34.77■■■■□ 3.16
LSM4-202ENST00000593564 CDK19Q9BWU1 502 aa34.75■■■■□ 3.15
LSM4-202ENST00000593564 CRYBG1Q9Y4K1 1723 aa34.75■■■■□ 3.15
LSM4-202ENST00000593564 KRT27Q7Z3Y8 459 aa34.74■■■■□ 3.15
LSM4-202ENST00000593564 POLR3AO14802 1390 aaPredicted RBP34.7■■■■□ 3.15
LSM4-202ENST00000593564 FAM98CQ17RN3 349 aaKnown RBP34.69■■■■□ 3.14
LSM4-202ENST00000593564 NBPF1Q3BBV0 1214 aa34.69■■■■□ 3.14
LSM4-202ENST00000593564 SF3B2Q13435 895 aaKnown RBP34.68■■■■□ 3.14
LSM4-202ENST00000593564 PRDM11Q9NQV5 511 aa34.68■■■■□ 3.14
LSM4-202ENST00000593564 CCDC61Q9Y6R9 512 aa34.68■■■■□ 3.14
LSM4-202ENST00000593564 TOPAZ1Q8N9V7 1692 aa34.67■■■■□ 3.14
LSM4-202ENST00000593564 A0A0G2JS52 829 aa34.67■■■■□ 3.14
LSM4-202ENST00000593564 MYT1Q01538 1121 aa34.67■■■■□ 3.14
LSM4-202ENST00000593564 SPATA31A5Q5VU36 1347 aa34.66■■■■□ 3.14
LSM4-202ENST00000593564 SPATA31A7Q8IWB4 1347 aa34.66■■■■□ 3.14
LSM4-202ENST00000593564 DEFB132Q7Z7B7 95 aa34.66■■■■□ 3.14
LSM4-202ENST00000593564 ACEP12821 1306 aa34.65■■■■□ 3.14
LSM4-202ENST00000593564 PLEKHG3A1L390 1219 aa34.65■■■■□ 3.14
LSM4-202ENST00000593564 KIAA0232Q92628 1395 aa34.63■■■■□ 3.13
LSM4-202ENST00000593564 NBPF8Q3BBV2 869 aa34.63■■■■□ 3.13
LSM4-202ENST00000593564 PHRF1Q9P1Y6 1649 aaKnown RBP34.59■■■■□ 3.13
LSM4-202ENST00000593564 CENPJQ9HC77 1338 aaPredicted RBP34.58■■■■□ 3.13
LSM4-202ENST00000593564 NUTM2GQ5VZR2 741 aa34.57■■■■□ 3.12
LSM4-202ENST00000593564 CHRNA2Q15822 529 aa34.56■■■■□ 3.12
LSM4-202ENST00000593564 THSD7AQ9UPZ6 1657 aa34.55■■■■□ 3.12
LSM4-202ENST00000593564 ZC3H6P61129 1189 aaKnown RBP34.54■■■■□ 3.12
LSM4-202ENST00000593564 SRPK2P78362 688 aaKnown RBP34.54■■■■□ 3.12
LSM4-202ENST00000593564 SPATA31A1Q5TZJ5 1347 aa34.54■■■■□ 3.12
LSM4-202ENST00000593564 ABTB2Q8N961 1025 aa34.52■■■■□ 3.12
LSM4-202ENST00000593564 PPIP5K1Q6PFW1 1433 aa34.52■■■■□ 3.12
LSM4-202ENST00000593564 BAG6P46379 1132 aa34.51■■■■□ 3.12
LSM4-202ENST00000593564 L3MBTL2Q969R5 705 aa34.5■■■■□ 3.11
LSM4-202ENST00000593564 CABP2Q9NPB3 220 aa34.5■■■■□ 3.11
LSM4-202ENST00000593564 USP19O94966 1318 aa34.5■■■■□ 3.11
LSM4-202ENST00000593564 NRKQ7Z2Y5 1582 aa34.49■■■■□ 3.11
LSM4-202ENST00000593564 STRN4Q9NRL3 753 aa34.49■■■■□ 3.11
LSM4-202ENST00000593564 QRICH2Q9H0J4 1663 aa34.47■■■■□ 3.11
LSM4-202ENST00000593564 BRD4O60885 1362 aaPredicted RBP34.47■■■■□ 3.11
LSM4-202ENST00000593564 CPDO75976 1380 aa34.47■■■■□ 3.11
LSM4-202ENST00000593564 FAM182BQ5T319 152 aa34.46■■■■□ 3.11
LSM4-202ENST00000593564 SSH2Q76I76 1423 aa34.45■■■■□ 3.11
LSM4-202ENST00000593564 NLRP13Q86W25 1043 aa34.43■■■■□ 3.1
LSM4-202ENST00000593564 RGPD1P0DJD0 1748 aa34.43■■■■□ 3.1
LSM4-202ENST00000593564 EVA1CP58658 441 aa34.42■■■■□ 3.1
LSM4-202ENST00000593564 CAMTA1Q9Y6Y1 1673 aa34.41■■■■□ 3.1
LSM4-202ENST00000593564 GCP02774 474 aa34.4■■■■□ 3.1
LSM4-202ENST00000593564 BARGINQ6ZT62 677 aa34.4■■■■□ 3.1
LSM4-202ENST00000593564 SIN3AQ96ST3 1273 aa34.4■■■■□ 3.1
LSM4-202ENST00000593564 CABP1Q9NZU7 370 aa34.4■■■■□ 3.1
LSM4-202ENST00000593564 LMO7Q8WWI1 1683 aa34.4■■■■□ 3.1
LSM4-202ENST00000593564 DISP2A7MBM2 1401 aa34.39■■■■□ 3.1
LSM4-202ENST00000593564 USP35Q9P2H5 1018 aa34.38■■■■□ 3.09
LSM4-202ENST00000593564 USP6P35125 1406 aa34.38■■■■□ 3.09
LSM4-202ENST00000593564 TRPM1Q7Z4N2 1603 aa34.37■■■■□ 3.09
LSM4-202ENST00000593564 EN1Q05925 392 aaPredicted RBP34.37■■■■□ 3.09
LSM4-202ENST00000593564 LARP1Q6PKG0 1096 aaKnown RBP34.37■■■■□ 3.09
LSM4-202ENST00000593564 FAM196AQ6ZSG2 479 aa34.36■■■■□ 3.09
LSM4-202ENST00000593564 EVC2Q86UK5 1308 aa34.35■■■■□ 3.09
LSM4-202ENST00000593564 TNS1Q9HBL0 1735 aaKnown RBP34.33■■■■□ 3.09
LSM4-202ENST00000593564 TCP11L2Q8N4U5 519 aa34.33■■■■□ 3.09
LSM4-202ENST00000593564 ROCK2O75116 1388 aaKnown RBP34.33■■■■□ 3.09
LSM4-202ENST00000593564 NEUROD1Q13562 356 aa34.31■■■■□ 3.08
LSM4-202ENST00000593564 NLRP6P59044 892 aa34.3■■■■□ 3.08
LSM4-202ENST00000593564 THRAP3Q9Y2W1 955 aaKnown RBP34.3■■■■□ 3.08
LSM4-202ENST00000593564 COL5A2P05997 1499 aaPredicted RBP34.3■■■■□ 3.08
LSM4-202ENST00000593564 LRP5O75197 1615 aa34.3■■■■□ 3.08
LSM4-202ENST00000593564 PSDA5PKW4 1024 aaPredicted RBP34.29■■■■□ 3.08
LSM4-202ENST00000593564 SLIT3O75094 1523 aa34.29■■■■□ 3.08
LSM4-202ENST00000593564 TRIM37O94972 964 aa34.28■■■■□ 3.08
LSM4-202ENST00000593564 PDE3BQ13370 1112 aa34.28■■■■□ 3.08
LSM4-202ENST00000593564 AATKQ6ZMQ8 1374 aa34.25■■■■□ 3.07
LSM4-202ENST00000593564 EZH2Q15910 746 aaKnown RBP34.24■■■■□ 3.07
LSM4-202ENST00000593564 CAMKK2Q96RR4 588 aa34.24■■■■□ 3.07
LSM4-202ENST00000593564 PIK3C2AO00443 1686 aa34.23■■■■□ 3.07
LSM4-202ENST00000593564 ZNF692Q9BU19 519 aaPredicted RBP34.23■■■■□ 3.07
LSM4-202ENST00000593564 CRB1P82279 1406 aa34.22■■■■□ 3.07
LSM4-202ENST00000593564 PARD3Q8TEW0 1356 aa34.22■■■■□ 3.07
LSM4-202ENST00000593564 ZBTB7CA1YPR0 619 aa34.2■■■■□ 3.07
LSM4-202ENST00000593564 APBA3O96018 575 aa34.2■■■■□ 3.07
LSM4-202ENST00000593564 TTC21BQ7Z4L5 1316 aa34.19■■■■□ 3.06
LSM4-202ENST00000593564 R3HDM1Q15032 1099 aaKnown RBP34.18■■■■□ 3.06
LSM4-202ENST00000593564 PARP4Q9UKK3 1724 aaKnown RBP34.18■■■■□ 3.06
LSM4-202ENST00000593564 TTC21AQ8NDW8 1320 aa34.15■■■■□ 3.06
LSM4-202ENST00000593564 CPSF1Q10570 1443 aaKnown RBP34.14■■■■□ 3.06
LSM4-202ENST00000593564 SBNO2Q9Y2G9 1366 aa34.14■■■■□ 3.06
LSM4-202ENST00000593564 AKAP12Q02952 1782 aa34.14■■■■□ 3.06
LSM4-202ENST00000593564 COL18A1P39060 1754 aa34.13■■■■□ 3.05
LSM4-202ENST00000593564 C11orf95C9JLR9 678 aaPredicted RBP34.13■■■■□ 3.05
LSM4-202ENST00000593564 KCNH5Q8NCM2 988 aa34.13■■■■□ 3.05
LSM4-202ENST00000593564 ARHGEF25Q86VW2 580 aa34.12■■■■□ 3.05
LSM4-202ENST00000593564 TOM1L2Q6ZVM7 507 aa34.11■■■■□ 3.05
LSM4-202ENST00000593564 AXIN2Q9Y2T1 843 aa34.11■■■■□ 3.05
LSM4-202ENST00000593564 WDR17Q8IZU2 1322 aa34.1■■■■□ 3.05
LSM4-202ENST00000593564 KTN1Q86UP2 1357 aaKnown RBP34.1■■■■□ 3.05
LSM4-202ENST00000593564 OVOS2A0A0G2JMS6 1433 aa34.08■■■■□ 3.05
LSM4-202ENST00000593564 OVOS2A0A0J9YW53 1432 aa34.08■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms