RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PSDA5PKW4 1024 aaPredicted RBP15.12■□□□□ 0.01
LIG3-212ENST00000590181 BAG6P46379 1132 aa15.12■□□□□ 0.01
LIG3-212ENST00000590181 RREB1Q92766 1687 aa15.12■□□□□ 0.01
LIG3-212ENST00000590181 TULP4Q9NRJ4 1543 aa15.11■□□□□ 0.01
LIG3-212ENST00000590181 TRAK1Q9UPV9 953 aa15.1■□□□□ 0.01
LIG3-212ENST00000590181 NUP188Q5SRE5 1749 aa15.09■□□□□ 0.01
LIG3-212ENST00000590181 ARHGEF28Q8N1W1 1705 aaKnown RBP15.09■□□□□ 0.01
LIG3-212ENST00000590181 ONECUT3O60422 494 aaPredicted RBP15.09■□□□□ 0.01
LIG3-212ENST00000590181 SAFB2Q14151 953 aaKnown RBP eCLIP15.09■□□□□ 0.01
LIG3-212ENST00000590181 FAM98CQ17RN3 349 aaKnown RBP15.09■□□□□ 0.01
LIG3-212ENST00000590181 DISP2A7MBM2 1401 aa15.09■□□□□ 0.01
LIG3-212ENST00000590181 WASLO00401 505 aaPredicted RBP15.07■□□□□ 0
LIG3-212ENST00000590181 TOPAZ1Q8N9V7 1692 aa15.06■□□□□ 0
LIG3-212ENST00000590181 FAM83GA6ND36 823 aa15.06■□□□□ 0
LIG3-212ENST00000590181 PMFBP1Q8TBY8 1022 aa15.06■□□□□ 0
LIG3-212ENST00000590181 BTG4Q9NY30 223 aa15.06■□□□□ 0
LIG3-212ENST00000590181 GPRASP1Q5JY77 1395 aa15.05■□□□□ -0
LIG3-212ENST00000590181 L3MBTL2Q969R5 705 aa15.04■□□□□ -0
LIG3-212ENST00000590181 NRKQ7Z2Y5 1582 aa15.03■□□□□ -0
LIG3-212ENST00000590181 EN1Q05925 392 aaPredicted RBP15.03■□□□□ -0
LIG3-212ENST00000590181 ATP7BP35670 1465 aa15.02■□□□□ -0
LIG3-212ENST00000590181 SPATA31A5Q5VU36 1347 aa15.02■□□□□ -0
LIG3-212ENST00000590181 SPATA31A7Q8IWB4 1347 aa15.02■□□□□ -0
LIG3-212ENST00000590181 R3HDM1Q15032 1099 aaKnown RBP15.02■□□□□ -0
LIG3-212ENST00000590181 FAM182BQ5T319 152 aa15.02■□□□□ -0
LIG3-212ENST00000590181 MINK1Q8N4C8 1332 aaPredicted RBP15.01□□□□□ -0.01
LIG3-212ENST00000590181 SLC24A1O60721 1099 aa15.01□□□□□ -0.01
LIG3-212ENST00000590181 HIRIP3Q9BW71 556 aaPredicted RBP15.01□□□□□ -0.01
LIG3-212ENST00000590181 PRR36Q9H6K5 1346 aa15□□□□□ -0.01
LIG3-212ENST00000590181 CCDC61Q9Y6R9 512 aa15□□□□□ -0.01
LIG3-212ENST00000590181 CENPJQ9HC77 1338 aaPredicted RBP14.99□□□□□ -0.01
LIG3-212ENST00000590181 PRDM11Q9NQV5 511 aa14.99□□□□□ -0.01
LIG3-212ENST00000590181 PARP4Q9UKK3 1724 aaKnown RBP14.99□□□□□ -0.01
LIG3-212ENST00000590181 LMO7Q8WWI1 1683 aa14.99□□□□□ -0.01
LIG3-212ENST00000590181 WNK3Q9BYP7 1800 aa14.99□□□□□ -0.01
LIG3-212ENST00000590181 BRD4O60885 1362 aaPredicted RBP14.98□□□□□ -0.01
LIG3-212ENST00000590181 RGPD3A6NKT7 1758 aaPredicted RBP14.98□□□□□ -0.01
LIG3-212ENST00000590181 RGPD4Q7Z3J3 1758 aa14.98□□□□□ -0.01
LIG3-212ENST00000590181 NEUROD1Q13562 356 aa14.98□□□□□ -0.01
LIG3-212ENST00000590181 NGDNQ8NEJ9 315 aaKnown RBP14.98□□□□□ -0.01
LIG3-212ENST00000590181 NUDT16Q96DE0 195 aaKnown RBP14.98□□□□□ -0.01
LIG3-212ENST00000590181 SIN3AQ96ST3 1273 aa14.98□□□□□ -0.01
LIG3-212ENST00000590181 PARD3Q8TEW0 1356 aa14.98□□□□□ -0.01
LIG3-212ENST00000590181 KIAA0232Q92628 1395 aa14.98□□□□□ -0.01
LIG3-212ENST00000590181 PLEKHG3A1L390 1219 aa14.97□□□□□ -0.01
LIG3-212ENST00000590181 NBPF1Q3BBV0 1214 aa14.97□□□□□ -0.01
LIG3-212ENST00000590181 CDK19Q9BWU1 502 aa14.97□□□□□ -0.01
LIG3-212ENST00000590181 CLSPNQ9HAW4 1339 aa14.96□□□□□ -0.01
LIG3-212ENST00000590181 PAK3O75914 559 aaPredicted RBP14.96□□□□□ -0.01
LIG3-212ENST00000590181 EZH2Q15910 746 aaKnown RBP14.96□□□□□ -0.01
LIG3-212ENST00000590181 TIMELESSQ9UNS1 1208 aa14.96□□□□□ -0.01
LIG3-212ENST00000590181 TONSLQ96HA7 1378 aa14.96□□□□□ -0.02
LIG3-212ENST00000590181 SPATA31A1Q5TZJ5 1347 aa14.95□□□□□ -0.02
LIG3-212ENST00000590181 ROCK2O75116 1388 aaKnown RBP14.95□□□□□ -0.02
LIG3-212ENST00000590181 TRPM1Q7Z4N2 1603 aa14.95□□□□□ -0.02
LIG3-212ENST00000590181 EVC2Q86UK5 1308 aa14.94□□□□□ -0.02
LIG3-212ENST00000590181 SSH2Q76I76 1423 aa14.94□□□□□ -0.02
LIG3-212ENST00000590181 TRIM37O94972 964 aa14.94□□□□□ -0.02
LIG3-212ENST00000590181 LRRC37A3O60309 1634 aa14.94□□□□□ -0.02
LIG3-212ENST00000590181 POLR3AO14802 1390 aaPredicted RBP14.94□□□□□ -0.02
LIG3-212ENST00000590181 STRN4Q9NRL3 753 aa14.93□□□□□ -0.02
LIG3-212ENST00000590181 SBF2Q86WG5 1849 aa14.93□□□□□ -0.02
LIG3-212ENST00000590181 PEAK1Q9H792 1746 aa14.92□□□□□ -0.02
LIG3-212ENST00000590181 CHRNA2Q15822 529 aa14.92□□□□□ -0.02
LIG3-212ENST00000590181 FAM196AQ6ZSG2 479 aa14.92□□□□□ -0.02
LIG3-212ENST00000590181 CAMKK2Q96RR4 588 aa14.92□□□□□ -0.02
LIG3-212ENST00000590181 CAMTA1Q9Y6Y1 1673 aa14.92□□□□□ -0.02
LIG3-212ENST00000590181 AKAP12Q02952 1782 aa14.91□□□□□ -0.02
LIG3-212ENST00000590181 SBNO2Q9Y2G9 1366 aa14.91□□□□□ -0.02
LIG3-212ENST00000590181 SRPK2P78362 688 aaKnown RBP14.91□□□□□ -0.02
LIG3-212ENST00000590181 CASZ1Q86V15 1759 aa14.9□□□□□ -0.02
LIG3-212ENST00000590181 NBPF8Q3BBV2 869 aa14.9□□□□□ -0.02
LIG3-212ENST00000590181 PUS7Q96PZ0 661 aaKnown RBP14.9□□□□□ -0.02
LIG3-212ENST00000590181 ZNF692Q9BU19 519 aaPredicted RBP14.9□□□□□ -0.02
LIG3-212ENST00000590181 APBA3O96018 575 aa14.89□□□□□ -0.03
LIG3-212ENST00000590181 USP35Q9P2H5 1018 aa14.89□□□□□ -0.03
LIG3-212ENST00000590181 QRICH2Q9H0J4 1663 aa14.89□□□□□ -0.03
LIG3-212ENST00000590181 ZC3H6P61129 1189 aaKnown RBP14.88□□□□□ -0.03
LIG3-212ENST00000590181 NUTM2GQ5VZR2 741 aa14.88□□□□□ -0.03
LIG3-212ENST00000590181 CARD11Q9BXL7 1154 aa14.88□□□□□ -0.03
LIG3-212ENST00000590181 ACEP12821 1306 aa14.88□□□□□ -0.03
LIG3-212ENST00000590181 COL5A2P05997 1499 aaPredicted RBP14.87□□□□□ -0.03
LIG3-212ENST00000590181 MYOM1P52179 1685 aa14.87□□□□□ -0.03
LIG3-212ENST00000590181 PDE3BQ13370 1112 aa14.86□□□□□ -0.03
LIG3-212ENST00000590181 BARGINQ6ZT62 677 aa14.86□□□□□ -0.03
LIG3-212ENST00000590181 CPDO75976 1380 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 OVOS2A0A0G2JMS6 1433 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 OVOS2A0A0J9YW53 1432 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 OVOS2Q6IE36 1432 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 PPIP5K1Q6PFW1 1433 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 YY1P25490 414 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 NLRP13Q86W25 1043 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 USP19O94966 1318 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 NINLQ9Y2I6 1382 aa14.85□□□□□ -0.03
LIG3-212ENST00000590181 PIK3C2AO00443 1686 aa14.84□□□□□ -0.03
LIG3-212ENST00000590181 SLIT3O75094 1523 aa14.83□□□□□ -0.04
LIG3-212ENST00000590181 EVA1CP58658 441 aa14.83□□□□□ -0.04
LIG3-212ENST00000590181 NBPF14Q5TI25 921 aa14.83□□□□□ -0.04
LIG3-212ENST00000590181 LARP1Q6PKG0 1096 aaKnown RBP14.83□□□□□ -0.04
LIG3-212ENST00000590181 ABTB2Q8N961 1025 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms