RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 SLF2Q8IX21 1173 aa9.03□□□□□ -0.96
SMAD4-208ENST00000589706 ADAMTS19Q8TE59 1207 aa9.03□□□□□ -0.96
SMAD4-208ENST00000589706 CUX1P39880 1505 aa9.02□□□□□ -0.97
SMAD4-208ENST00000589706 FUT2Q10981 343 aa9.02□□□□□ -0.97
SMAD4-208ENST00000589706 CFHP08603 1231 aa9.01□□□□□ -0.97
SMAD4-208ENST00000589706 PDE4CQ08493 712 aa9.01□□□□□ -0.97
SMAD4-208ENST00000589706 POTEEQ6S8J3 1075 aa9.01□□□□□ -0.97
SMAD4-208ENST00000589706 SAMD7Q7Z3H4 446 aa9.01□□□□□ -0.97
SMAD4-208ENST00000589706 NPM2Q86SE8 214 aaKnown RBP9.01□□□□□ -0.97
SMAD4-208ENST00000589706 ABCA5Q8WWZ7 1642 aa9.01□□□□□ -0.97
SMAD4-208ENST00000589706 ATP6V1AP38606 617 aa9□□□□□ -0.97
SMAD4-208ENST00000589706 VAC14Q08AM6 782 aa9□□□□□ -0.97
SMAD4-208ENST00000589706 DMRTA1Q5VZB9 504 aa9□□□□□ -0.97
SMAD4-208ENST00000589706 PBXIP1Q96AQ6 731 aa9□□□□□ -0.97
SMAD4-208ENST00000589706 ADCY10Q96PN6 1610 aa9□□□□□ -0.97
SMAD4-208ENST00000589706 ERBB3P21860 1342 aa9□□□□□ -0.97
SMAD4-208ENST00000589706 EPS8L1Q8TE68 723 aa8.99□□□□□ -0.97
SMAD4-208ENST00000589706 VPS9D1Q9Y2B5 631 aa8.99□□□□□ -0.97
SMAD4-208ENST00000589706 COL17A1Q9UMD9 1497 aaPredicted RBP8.98□□□□□ -0.97
SMAD4-208ENST00000589706 RFX1P22670 979 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 VARS2Q5ST30 1063 aaKnown RBP8.98□□□□□ -0.97
SMAD4-208ENST00000589706 LAPTM4BQ86VI4 370 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 PRR7Q8TB68 274 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 SYMPKQ92797 1274 aaKnown RBP8.98□□□□□ -0.97
SMAD4-208ENST00000589706 ALG2Q9H553 416 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 AXIN2Q9Y2T1 843 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 ABCA10Q8WWZ4 1543 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 ADAMTS12P58397 1594 aa8.98□□□□□ -0.97
SMAD4-208ENST00000589706 CFAP70Q5T0N1 1121 aa8.97□□□□□ -0.97
SMAD4-208ENST00000589706 PPP1R12CQ9BZL4 782 aa8.97□□□□□ -0.97
SMAD4-208ENST00000589706 RNF40O75150 1001 aa8.96□□□□□ -0.98
SMAD4-208ENST00000589706 PBX2P40425 430 aa8.96□□□□□ -0.98
SMAD4-208ENST00000589706 KMT5BQ4FZB7 885 aa8.96□□□□□ -0.98
SMAD4-208ENST00000589706 PPRC1Q5VV67 1664 aaKnown RBP8.96□□□□□ -0.98
SMAD4-208ENST00000589706 FHAD1B1AJZ9 1412 aa8.96□□□□□ -0.98
SMAD4-208ENST00000589706 TOP2BQ02880 1626 aa8.95□□□□□ -0.98
SMAD4-208ENST00000589706 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.95□□□□□ -0.98
SMAD4-208ENST00000589706 SOX11P35716 441 aa8.95□□□□□ -0.98
SMAD4-208ENST00000589706 SRPK2P78362 688 aaKnown RBP8.95□□□□□ -0.98
SMAD4-208ENST00000589706 NR6A1Q15406 480 aa8.95□□□□□ -0.98
SMAD4-208ENST00000589706 RETREG3Q86VR2 466 aa8.95□□□□□ -0.98
SMAD4-208ENST00000589706 NBPF3Q9H094 633 aa8.95□□□□□ -0.98
SMAD4-208ENST00000589706 PER1O15534 1290 aaPredicted RBP8.94□□□□□ -0.98
SMAD4-208ENST00000589706 PALM3A6NDB9 673 aaPredicted RBP8.93□□□□□ -0.98
SMAD4-208ENST00000589706 MORN1Q5T089 497 aa8.93□□□□□ -0.98
SMAD4-208ENST00000589706 ZFRQ96KR1 1074 aaKnown RBP8.93□□□□□ -0.98
SMAD4-208ENST00000589706 BHMG1C9JSJ3 638 aaPredicted RBP8.92□□□□□ -0.98
SMAD4-208ENST00000589706 CSB-PGBD3P0DP91 1061 aa8.92□□□□□ -0.98
SMAD4-208ENST00000589706 LMOD1P29536 600 aaPredicted RBP8.92□□□□□ -0.98
SMAD4-208ENST00000589706 DESI1Q6ICB0 168 aa8.92□□□□□ -0.98
SMAD4-208ENST00000589706 PNMA1Q8ND90 353 aa8.92□□□□□ -0.98
SMAD4-208ENST00000589706 OTUD5Q96G74 571 aa8.92□□□□□ -0.98
SMAD4-208ENST00000589706 USTQ9Y2C2 406 aa8.92□□□□□ -0.98
SMAD4-208ENST00000589706 ACTN4O43707 911 aaKnown RBP8.91□□□□□ -0.98
SMAD4-208ENST00000589706 SEMA3FQ13275 785 aa8.91□□□□□ -0.98
SMAD4-208ENST00000589706 Q3C1V9 767 aa8.91□□□□□ -0.98
SMAD4-208ENST00000589706 PUS10Q3MIT2 529 aaKnown RBP8.91□□□□□ -0.98
SMAD4-208ENST00000589706 ZNF687Q8N1G0 1237 aa8.91□□□□□ -0.98
SMAD4-208ENST00000589706 UCN2Q96RP3 112 aa8.91□□□□□ -0.98
SMAD4-208ENST00000589706 GZF1Q9H116 711 aaPredicted RBP8.91□□□□□ -0.98
SMAD4-208ENST00000589706 TFIP11Q9UBB9 837 aaKnown RBP8.91□□□□□ -0.98
SMAD4-208ENST00000589706 SLC27A5Q9Y2P5 690 aa8.91□□□□□ -0.98
SMAD4-208ENST00000589706 GLI2P10070 1586 aa8.9□□□□□ -0.98
SMAD4-208ENST00000589706 PATL2C9JE40 543 aaKnown RBP8.89□□□□□ -0.99
SMAD4-208ENST00000589706 ASXL2Q76L83 1435 aa8.88□□□□□ -0.99
SMAD4-208ENST00000589706 TK2O00142 265 aa8.88□□□□□ -0.99
SMAD4-208ENST00000589706 EIF4G2P78344 907 aaKnown RBP eCLIP8.88□□□□□ -0.99
SMAD4-208ENST00000589706 TMCO4Q5TGY1 634 aa8.88□□□□□ -0.99
SMAD4-208ENST00000589706 LYPD8Q6UX82 237 aa8.88□□□□□ -0.99
SMAD4-208ENST00000589706 MRPL50Q8N5N7 158 aaKnown RBP8.88□□□□□ -0.99
SMAD4-208ENST00000589706 LRCH3Q96II8 777 aa8.88□□□□□ -0.99
SMAD4-208ENST00000589706 PLB1Q6P1J6 1458 aa8.88□□□□□ -0.99
SMAD4-208ENST00000589706 BRD1O95696 1058 aa8.87□□□□□ -0.99
SMAD4-208ENST00000589706 EMP3P54852 163 aa8.87□□□□□ -0.99
SMAD4-208ENST00000589706 PRR14Q9BWN1 585 aa8.87□□□□□ -0.99
SMAD4-208ENST00000589706 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.87□□□□□ -0.99
SMAD4-208ENST00000589706 RUSC2Q8N2Y8 1516 aa8.86□□□□□ -0.99
SMAD4-208ENST00000589706 TEX14Q8IWB6 1497 aa8.86□□□□□ -0.99
SMAD4-208ENST00000589706 NR1H3Q13133 447 aa8.86□□□□□ -0.99
SMAD4-208ENST00000589706 MAFBQ9Y5Q3 323 aaPredicted RBP8.86□□□□□ -0.99
SMAD4-208ENST00000589706 ST18O60284 1047 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 ATG7O95352 703 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 KCNA1Q09470 495 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 BLOC1S3Q6QNY0 202 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 RNF19BQ6ZMZ0 732 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 TBC1D9Q6ZT07 1266 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 USB1Q9BQ65 265 aaKnown RBP8.85□□□□□ -0.99
SMAD4-208ENST00000589706 WRNQ14191 1432 aaPredicted RBP eCLIP8.85□□□□□ -0.99
SMAD4-208ENST00000589706 SPATA31D1Q6ZQQ2 1576 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 ERICH3Q5RHP9 1530 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 ABCC2Q92887 1545 aa8.85□□□□□ -0.99
SMAD4-208ENST00000589706 FAM205CA6NFA0 338 aa8.84□□□□□ -0.99
SMAD4-208ENST00000589706 PTPRGP23470 1445 aa8.84□□□□□ -0.99
SMAD4-208ENST00000589706 CDCA8Q53HL2 280 aa8.84□□□□□ -0.99
SMAD4-208ENST00000589706 MARVELD3Q96A59 401 aa8.84□□□□□ -0.99
SMAD4-208ENST00000589706 SALL2Q9Y467 1007 aaPredicted RBP8.84□□□□□ -0.99
SMAD4-208ENST00000589706 MAP3K4Q9Y6R4 1608 aa8.83□□□□□ -1
SMAD4-208ENST00000589706 PTPRMP28827 1452 aa8.83□□□□□ -1
SMAD4-208ENST00000589706 CARNS1A5YM72 827 aa8.83□□□□□ -1
SMAD4-208ENST00000589706 ATP9BO43861 1147 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms