RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 SRPK2P78362 688 aaKnown RBP20.67■□□□□ 0.9
VMP1-206ENST00000587945 CABP2Q9NPB3 220 aa20.67■□□□□ 0.9
VMP1-206ENST00000587945 ABCA3Q99758 1704 aa20.67■□□□□ 0.9
VMP1-206ENST00000587945 PLEKHG3A1L390 1219 aa20.66■□□□□ 0.9
VMP1-206ENST00000587945 ONECUT3O60422 494 aaPredicted RBP20.66■□□□□ 0.9
VMP1-206ENST00000587945 POLR3AO14802 1390 aaPredicted RBP20.66■□□□□ 0.9
VMP1-206ENST00000587945 ALS2Q96Q42 1657 aa20.66■□□□□ 0.9
VMP1-206ENST00000587945 KIAA1210Q9ULL0 1709 aa20.65■□□□□ 0.9
VMP1-206ENST00000587945 PRDM11Q9NQV5 511 aa20.65■□□□□ 0.9
VMP1-206ENST00000587945 A0A0G2JS52 829 aa20.64■□□□□ 0.89
VMP1-206ENST00000587945 MYT1Q01538 1121 aa20.64■□□□□ 0.89
VMP1-206ENST00000587945 CHRNA2Q15822 529 aa20.64■□□□□ 0.89
VMP1-206ENST00000587945 FAM98CQ17RN3 349 aaKnown RBP20.64■□□□□ 0.89
VMP1-206ENST00000587945 CCDC125Q86Z20 511 aa20.64■□□□□ 0.89
VMP1-206ENST00000587945 PLCH1Q4KWH8 1693 aa20.64■□□□□ 0.89
VMP1-206ENST00000587945 EP400Q96L91 3159 aa20.63■□□□□ 0.89
VMP1-206ENST00000587945 KIAA0232Q92628 1395 aa20.62■□□□□ 0.89
VMP1-206ENST00000587945 ZC3H6P61129 1189 aaKnown RBP20.62■□□□□ 0.89
VMP1-206ENST00000587945 KRT27Q7Z3Y8 459 aa20.62■□□□□ 0.89
VMP1-206ENST00000587945 NWD2Q9ULI1 1742 aa20.61■□□□□ 0.89
VMP1-206ENST00000587945 ABTB2Q8N961 1025 aa20.6■□□□□ 0.89
VMP1-206ENST00000587945 PPIP5K1Q6PFW1 1433 aa20.6■□□□□ 0.89
VMP1-206ENST00000587945 SPATA31A5Q5VU36 1347 aa20.59■□□□□ 0.89
VMP1-206ENST00000587945 SPATA31A7Q8IWB4 1347 aa20.59■□□□□ 0.89
VMP1-206ENST00000587945 CABP1Q9NZU7 370 aa20.59■□□□□ 0.89
VMP1-206ENST00000587945 DEFB132Q7Z7B7 95 aa20.58■□□□□ 0.89
VMP1-206ENST00000587945 STRN4Q9NRL3 753 aa20.58■□□□□ 0.89
VMP1-206ENST00000587945 BLMP54132 1417 aaPredicted RBP20.58■□□□□ 0.88
VMP1-206ENST00000587945 ITSN1Q15811 1721 aa20.58■□□□□ 0.88
VMP1-206ENST00000587945 COL14A1Q05707 1796 aaKnown RBP20.57■□□□□ 0.88
VMP1-206ENST00000587945 TOPAZ1Q8N9V7 1692 aa20.57■□□□□ 0.88
VMP1-206ENST00000587945 ROCK2O75116 1388 aaKnown RBP20.57■□□□□ 0.88
VMP1-206ENST00000587945 NRAPQ86VF7 1730 aa20.56■□□□□ 0.88
VMP1-206ENST00000587945 ZRANB1Q9UGI0 708 aa20.56■□□□□ 0.88
VMP1-206ENST00000587945 FAM182BQ5T319 152 aa20.55■□□□□ 0.88
VMP1-206ENST00000587945 CRYBG1Q9Y4K1 1723 aa20.55■□□□□ 0.88
VMP1-206ENST00000587945 SF3B2Q13435 895 aaKnown RBP20.54■□□□□ 0.88
VMP1-206ENST00000587945 USP19O94966 1318 aa20.53■□□□□ 0.88
VMP1-206ENST00000587945 EVC2Q86UK5 1308 aa20.53■□□□□ 0.88
VMP1-206ENST00000587945 BRWD3Q6RI45 1802 aa20.53■□□□□ 0.88
VMP1-206ENST00000587945 SPATA31A1Q5TZJ5 1347 aa20.53■□□□□ 0.88
VMP1-206ENST00000587945 GCP02774 474 aa20.52■□□□□ 0.88
VMP1-206ENST00000587945 NLRP13Q86W25 1043 aa20.52■□□□□ 0.88
VMP1-206ENST00000587945 EVA1CP58658 441 aa20.51■□□□□ 0.87
VMP1-206ENST00000587945 USP35Q9P2H5 1018 aa20.51■□□□□ 0.87
VMP1-206ENST00000587945 QRICH2Q9H0J4 1663 aa20.51■□□□□ 0.87
VMP1-206ENST00000587945 TRPM1Q7Z4N2 1603 aa20.5■□□□□ 0.87
VMP1-206ENST00000587945 USP6P35125 1406 aa20.5■□□□□ 0.87
VMP1-206ENST00000587945 PHRF1Q9P1Y6 1649 aaKnown RBP20.49■□□□□ 0.87
VMP1-206ENST00000587945 NLRP6P59044 892 aa20.49■□□□□ 0.87
VMP1-206ENST00000587945 LARP1Q6PKG0 1096 aaKnown RBP20.49■□□□□ 0.87
VMP1-206ENST00000587945 SRCAPQ6ZRS2 3230 aa20.49■□□□□ 0.87
VMP1-206ENST00000587945 CPDO75976 1380 aa20.48■□□□□ 0.87
VMP1-206ENST00000587945 ZBTB7CA1YPR0 619 aa20.48■□□□□ 0.87
VMP1-206ENST00000587945 NRKQ7Z2Y5 1582 aa20.47■□□□□ 0.87
VMP1-206ENST00000587945 SSH2Q76I76 1423 aa20.47■□□□□ 0.87
VMP1-206ENST00000587945 BRD4O60885 1362 aaPredicted RBP20.46■□□□□ 0.87
VMP1-206ENST00000587945 CAMTA1Q9Y6Y1 1673 aa20.46■□□□□ 0.87
VMP1-206ENST00000587945 CARD11Q9BXL7 1154 aa20.45■□□□□ 0.86
VMP1-206ENST00000587945 BAG6P46379 1132 aa20.44■□□□□ 0.86
VMP1-206ENST00000587945 THSD7AQ9UPZ6 1657 aa20.43■□□□□ 0.86
VMP1-206ENST00000587945 TTC21BQ7Z4L5 1316 aa20.43■□□□□ 0.86
VMP1-206ENST00000587945 TONSLQ96HA7 1378 aa20.43■□□□□ 0.86
VMP1-206ENST00000587945 EN1Q05925 392 aaPredicted RBP20.42■□□□□ 0.86
VMP1-206ENST00000587945 BARGINQ6ZT62 677 aa20.42■□□□□ 0.86
VMP1-206ENST00000587945 TCP11L2Q8N4U5 519 aa20.42■□□□□ 0.86
VMP1-206ENST00000587945 ZNF692Q9BU19 519 aaPredicted RBP20.42■□□□□ 0.86
VMP1-206ENST00000587945 SOX12O15370 315 aa20.4■□□□□ 0.86
VMP1-206ENST00000587945 TRIM37O94972 964 aa20.39■□□□□ 0.85
VMP1-206ENST00000587945 PDE3BQ13370 1112 aa20.39■□□□□ 0.85
VMP1-206ENST00000587945 LMO7Q8WWI1 1683 aa20.38■□□□□ 0.85
VMP1-206ENST00000587945 COL5A2P05997 1499 aaPredicted RBP20.38■□□□□ 0.85
VMP1-206ENST00000587945 AATKQ6ZMQ8 1374 aa20.38■□□□□ 0.85
VMP1-206ENST00000587945 TRIM26Q12899 539 aaPredicted RBP20.38■□□□□ 0.85
VMP1-206ENST00000587945 FAM196AQ6ZSG2 479 aa20.38■□□□□ 0.85
VMP1-206ENST00000587945 SLIT3O75094 1523 aa20.37■□□□□ 0.85
VMP1-206ENST00000587945 CPSF1Q10570 1443 aaKnown RBP20.37■□□□□ 0.85
VMP1-206ENST00000587945 AXIN2Q9Y2T1 843 aa20.37■□□□□ 0.85
VMP1-206ENST00000587945 KTN1Q86UP2 1357 aaKnown RBP20.36■□□□□ 0.85
VMP1-206ENST00000587945 PSDA5PKW4 1024 aaPredicted RBP20.36■□□□□ 0.85
VMP1-206ENST00000587945 THRAP3Q9Y2W1 955 aaKnown RBP20.36■□□□□ 0.85
VMP1-206ENST00000587945 SBNO2Q9Y2G9 1366 aa20.35■□□□□ 0.85
VMP1-206ENST00000587945 TTC21AQ8NDW8 1320 aa20.35■□□□□ 0.85
VMP1-206ENST00000587945 EZH2Q15910 746 aaKnown RBP20.35■□□□□ 0.85
VMP1-206ENST00000587945 ARHGEF25Q86VW2 580 aa20.35■□□□□ 0.85
VMP1-206ENST00000587945 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.85
VMP1-206ENST00000587945 TMC1Q8TDI8 760 aa20.35■□□□□ 0.85
VMP1-206ENST00000587945 PIK3C2AO00443 1686 aa20.35■□□□□ 0.85
VMP1-206ENST00000587945 TOM1L2Q6ZVM7 507 aa20.34■□□□□ 0.85
VMP1-206ENST00000587945 CRB1P82279 1406 aa20.34■□□□□ 0.85
VMP1-206ENST00000587945 KCNH5Q8NCM2 988 aa20.33■□□□□ 0.85
VMP1-206ENST00000587945 SLC12A5Q9H2X9 1139 aa20.33■□□□□ 0.85
VMP1-206ENST00000587945 APBA3O96018 575 aa20.32■□□□□ 0.84
VMP1-206ENST00000587945 DISP2A7MBM2 1401 aa20.31■□□□□ 0.84
VMP1-206ENST00000587945 CAMKK2Q96RR4 588 aa20.31■□□□□ 0.84
VMP1-206ENST00000587945 NME9Q86XW9 330 aa20.3■□□□□ 0.84
VMP1-206ENST00000587945 WDR17Q8IZU2 1322 aa20.29■□□□□ 0.84
VMP1-206ENST00000587945 CD163L1Q9NR16 1453 aa20.29■□□□□ 0.84
VMP1-206ENST00000587945 ST20-MTHFSA0A0A6YYL1 179 aa20.28■□□□□ 0.84
VMP1-206ENST00000587945 CSB-PGBD3P0DP91 1061 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms