RNA–Protein interactions for RNA: ENST00000587904.5

LINC01539-201, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 2 BASIC

Gene LINC01539, Length 2,068 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-201ENST00000587904 CDC42BPGQ6DT37 1551 aa12.59□□□□□ -0.39
LINC01539-201ENST00000587904 CFAP53Q96M91 514 aa12.59□□□□□ -0.39
LINC01539-201ENST00000587904 PDIA4P13667 645 aaKnown RBP12.58□□□□□ -0.39
LINC01539-201ENST00000587904 TBX22Q9Y458 520 aa12.58□□□□□ -0.39
LINC01539-201ENST00000587904 PIK3R4Q99570 1358 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 ROBO2Q9HCK4 1378 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 CPSF1Q10570 1443 aaKnown RBP12.57□□□□□ -0.4
LINC01539-201ENST00000587904 EDC4Q6P2E9 1401 aaKnown RBP12.57□□□□□ -0.4
LINC01539-201ENST00000587904 PPIP5K1Q6PFW1 1433 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 MON2Q7Z3U7 1717 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 XRN1Q8IZH2 1706 aaKnown RBP12.57□□□□□ -0.4
LINC01539-201ENST00000587904 TOPAZ1Q8N9V7 1692 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 ITSN1Q15811 1721 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 RRP9O43818 475 aaKnown RBP12.57□□□□□ -0.4
LINC01539-201ENST00000587904 CABP1Q9NZU7 370 aa12.57□□□□□ -0.4
LINC01539-201ENST00000587904 AKAP12Q02952 1782 aa12.56□□□□□ -0.4
LINC01539-201ENST00000587904 RBM10P98175 930 aaKnown RBP12.56□□□□□ -0.4
LINC01539-201ENST00000587904 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.55□□□□□ -0.4
LINC01539-201ENST00000587904 PTPRUQ92729 1446 aa12.55□□□□□ -0.4
LINC01539-201ENST00000587904 ZNF521Q96K83 1311 aa12.55□□□□□ -0.4
LINC01539-201ENST00000587904 FYB1O15117 783 aa12.54□□□□□ -0.4
LINC01539-201ENST00000587904 BRPF3Q9ULD4 1205 aa12.54□□□□□ -0.4
LINC01539-201ENST00000587904 CCDC61Q9Y6R9 512 aa12.54□□□□□ -0.4
LINC01539-201ENST00000587904 NEFMP07197 916 aa12.53□□□□□ -0.4
LINC01539-201ENST00000587904 MTHFSP49914 203 aa12.53□□□□□ -0.4
LINC01539-201ENST00000587904 SETD1BQ9UPS6 1966 aaKnown RBP12.53□□□□□ -0.4
LINC01539-201ENST00000587904 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
LINC01539-201ENST00000587904 NUDT16Q96DE0 195 aaKnown RBP12.53□□□□□ -0.4
LINC01539-201ENST00000587904 COL3A1P02461 1466 aaPredicted RBP12.52□□□□□ -0.4
LINC01539-201ENST00000587904 IQSEC2Q5JU85 1478 aa12.52□□□□□ -0.4
LINC01539-201ENST00000587904 PPM1GO15355 546 aaPredicted RBP12.52□□□□□ -0.4
LINC01539-201ENST00000587904 TNNT2P45379 298 aaPredicted RBP12.52□□□□□ -0.4
LINC01539-201ENST00000587904 SLC26A8Q96RN1 970 aa12.52□□□□□ -0.41
LINC01539-201ENST00000587904 GGNBP2Q9H3C7 697 aa12.52□□□□□ -0.41
LINC01539-201ENST00000587904 NRKQ7Z2Y5 1582 aa12.52□□□□□ -0.41
LINC01539-201ENST00000587904 ZNF692Q9BU19 519 aaPredicted RBP12.51□□□□□ -0.41
LINC01539-201ENST00000587904 RCAN3Q9UKA8 241 aa12.51□□□□□ -0.41
LINC01539-201ENST00000587904 GOLGA2Q08379 1002 aa12.5□□□□□ -0.41
LINC01539-201ENST00000587904 AMOTL2Q9Y2J4 779 aa12.5□□□□□ -0.41
LINC01539-201ENST00000587904 SENP3-EIF4A1A0A087X0R7 540 aa12.5□□□□□ -0.41
LINC01539-201ENST00000587904 RUNDC1Q96C34 613 aa12.5□□□□□ -0.41
LINC01539-201ENST00000587904 PNPLA6Q8IY17 1366 aa12.5□□□□□ -0.41
LINC01539-201ENST00000587904 IRX6P78412 446 aaPredicted RBP12.49□□□□□ -0.41
LINC01539-201ENST00000587904 CCDC146Q8IYE0 955 aa12.49□□□□□ -0.41
LINC01539-201ENST00000587904 PRR36Q9H6K5 1346 aa12.49□□□□□ -0.41
LINC01539-201ENST00000587904 APAF1O14727 1248 aa12.49□□□□□ -0.41
LINC01539-201ENST00000587904 RRP1P56182 461 aaKnown RBP12.49□□□□□ -0.41
LINC01539-201ENST00000587904 GSE1Q14687 1217 aa12.49□□□□□ -0.41
LINC01539-201ENST00000587904 ANKLE2Q86XL3 938 aa12.49□□□□□ -0.41
LINC01539-201ENST00000587904 CDCA7LQ96GN5 454 aa12.49□□□□□ -0.41
LINC01539-201ENST00000587904 AATKQ6ZMQ8 1374 aa12.48□□□□□ -0.41
LINC01539-201ENST00000587904 ANKARQ7Z5J8 1434 aa12.48□□□□□ -0.41
LINC01539-201ENST00000587904 A0A0U1RQG5 324 aaPredicted RBP12.48□□□□□ -0.41
LINC01539-201ENST00000587904 PLEKHG3A1L390 1219 aa12.48□□□□□ -0.41
LINC01539-201ENST00000587904 HSP90AA2PQ14568 343 aaPredicted RBP12.48□□□□□ -0.41
LINC01539-201ENST00000587904 DUSP27Q5VZP5 1158 aa12.47□□□□□ -0.41
LINC01539-201ENST00000587904 CHD2O14647 1828 aaKnown RBP12.47□□□□□ -0.41
LINC01539-201ENST00000587904 CDK12Q9NYV4 1490 aaPredicted RBP12.47□□□□□ -0.41
LINC01539-201ENST00000587904 E9PSI1 815 aa12.46□□□□□ -0.41
LINC01539-201ENST00000587904 SLFN5Q08AF3 891 aa12.46□□□□□ -0.41
LINC01539-201ENST00000587904 CCDC27Q2M243 656 aa12.46□□□□□ -0.41
LINC01539-201ENST00000587904 TRMT2AQ8IZ69 625 aaKnown RBP12.46□□□□□ -0.41
LINC01539-201ENST00000587904 NKTRP30414 1462 aaKnown RBP12.46□□□□□ -0.42
LINC01539-201ENST00000587904 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.46□□□□□ -0.42
LINC01539-201ENST00000587904 PNNQ9H307 717 aaKnown RBP12.46□□□□□ -0.42
LINC01539-201ENST00000587904 FMN2Q9NZ56 1722 aa12.45□□□□□ -0.42
LINC01539-201ENST00000587904 USP6P35125 1406 aa12.45□□□□□ -0.42
LINC01539-201ENST00000587904 U2AF1L5P0DN76 240 aaPredicted RBP12.44□□□□□ -0.42
LINC01539-201ENST00000587904 U2AF1Q01081 240 aaKnown RBP eCLIP12.44□□□□□ -0.42
LINC01539-201ENST00000587904 COG3Q96JB2 828 aa12.44□□□□□ -0.42
LINC01539-201ENST00000587904 NALCNQ8IZF0 1738 aa12.44□□□□□ -0.42
LINC01539-201ENST00000587904 DIAPH1O60610 1272 aaKnown RBP12.44□□□□□ -0.42
LINC01539-201ENST00000587904 OVOS2A0A0J9YW53 1432 aa12.43□□□□□ -0.42
LINC01539-201ENST00000587904 OVOS2Q6IE36 1432 aa12.43□□□□□ -0.42
LINC01539-201ENST00000587904 TCP11L2Q8N4U5 519 aa12.43□□□□□ -0.42
LINC01539-201ENST00000587904 MAP2P11137 1827 aaKnown RBP12.43□□□□□ -0.42
LINC01539-201ENST00000587904 NPHP4O75161 1426 aaPredicted RBP12.43□□□□□ -0.42
LINC01539-201ENST00000587904 SSH2Q76I76 1423 aa12.43□□□□□ -0.42
LINC01539-201ENST00000587904 ILDR1Q86SU0 546 aaPredicted RBP12.42□□□□□ -0.42
LINC01539-201ENST00000587904 NME9Q86XW9 330 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 WDR63Q8IWG1 891 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 WWC1Q8IX03 1113 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 ACEP12821 1306 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 TTC21AQ8NDW8 1320 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 NWD1Q149M9 1564 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 KCNA6P17658 529 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 TAF7LQ5H9L4 462 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 POLKQ9UBT6 870 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 LRRC7Q96NW7 1537 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 TTC21BQ7Z4L5 1316 aa12.42□□□□□ -0.42
LINC01539-201ENST00000587904 NCKAP5LQ9HCH0 1330 aa12.41□□□□□ -0.42
LINC01539-201ENST00000587904 MAPK8IP3Q9UPT6 1336 aa12.4□□□□□ -0.42
LINC01539-201ENST00000587904 U2SURPO15042 1029 aaKnown RBP12.4□□□□□ -0.42
LINC01539-201ENST00000587904 HSP90AA1P07900 732 aaKnown RBP12.4□□□□□ -0.42
LINC01539-201ENST00000587904 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.4□□□□□ -0.42
LINC01539-201ENST00000587904 BCL11BQ9C0K0 894 aaPredicted RBP12.4□□□□□ -0.42
LINC01539-201ENST00000587904 USP54Q70EL1 1684 aa12.4□□□□□ -0.42
LINC01539-201ENST00000587904 PLEKHF1Q96S99 279 aa12.39□□□□□ -0.43
LINC01539-201ENST00000587904 USP31Q70CQ4 1352 aa12.39□□□□□ -0.43
LINC01539-201ENST00000587904 ADGRL3Q9HAR2 1447 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms