RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 BRD4O60885 1362 aaPredicted RBP8.36□□□□□ -1.07
LIG3-206ENST00000586058 PARD3Q8TEW0 1356 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 ROBO2Q9HCK4 1378 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 STRCP1A6NGW2 1772 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 C19orf67A6NJJ6 358 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 C14orf37Q86TY3 774 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 CDK19Q9BWU1 502 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 CABP2Q9NPB3 220 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 ANKARQ7Z5J8 1434 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 PTPRUQ92729 1446 aa8.36□□□□□ -1.07
LIG3-206ENST00000586058 PLEKHH1Q9ULM0 1364 aa8.35□□□□□ -1.07
LIG3-206ENST00000586058 WASLO00401 505 aaPredicted RBP8.35□□□□□ -1.07
LIG3-206ENST00000586058 CC2D1BQ5T0F9 858 aaKnown RBP8.35□□□□□ -1.07
LIG3-206ENST00000586058 WAPLQ7Z5K2 1190 aa8.35□□□□□ -1.07
LIG3-206ENST00000586058 NLRP13Q86W25 1043 aa8.35□□□□□ -1.07
LIG3-206ENST00000586058 XIRP1Q702N8 1843 aaKnown RBP8.35□□□□□ -1.07
LIG3-206ENST00000586058 ADGRL3Q9HAR2 1447 aa8.35□□□□□ -1.07
LIG3-206ENST00000586058 A0A1W2PP64 1363 aa8.35□□□□□ -1.07
LIG3-206ENST00000586058 USP54Q70EL1 1684 aa8.34□□□□□ -1.07
LIG3-206ENST00000586058 EDC4Q6P2E9 1401 aaKnown RBP8.34□□□□□ -1.07
LIG3-206ENST00000586058 NCKAP5LQ9HCH0 1330 aa8.33□□□□□ -1.08
LIG3-206ENST00000586058 PRR29P0C7W0 189 aa8.33□□□□□ -1.08
LIG3-206ENST00000586058 LTN1O94822 1766 aa8.33□□□□□ -1.08
LIG3-206ENST00000586058 KCNA6P17658 529 aa8.32□□□□□ -1.08
LIG3-206ENST00000586058 SHPRHQ149N8 1683 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 DCCP43146 1447 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 KDM4FA0A1W2PPD8 638 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 PER1O15534 1290 aaPredicted RBP8.31□□□□□ -1.08
LIG3-206ENST00000586058 MORC1Q86VD1 984 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 NUDT16Q96DE0 195 aaKnown RBP8.31□□□□□ -1.08
LIG3-206ENST00000586058 CFAP53Q96M91 514 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 SLC12A5Q9H2X9 1139 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 CCDC61Q9Y6R9 512 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 CD163L1Q9NR16 1453 aa8.31□□□□□ -1.08
LIG3-206ENST00000586058 NCOA3Q9Y6Q9 1424 aa8.3□□□□□ -1.08
LIG3-206ENST00000586058 LRRC7Q96NW7 1537 aa8.3□□□□□ -1.08
LIG3-206ENST00000586058 WDR43Q15061 677 aaKnown RBP eCLIP8.3□□□□□ -1.08
LIG3-206ENST00000586058 FAM9BQ8IZU0 186 aa8.3□□□□□ -1.08
LIG3-206ENST00000586058 PIK3C2AO00443 1686 aa8.3□□□□□ -1.08
LIG3-206ENST00000586058 AMER1Q5JTC6 1135 aaPredicted RBP8.29□□□□□ -1.08
LIG3-206ENST00000586058 CABP1Q9NZU7 370 aa8.29□□□□□ -1.08
LIG3-206ENST00000586058 MSH6P52701 1360 aa8.29□□□□□ -1.08
LIG3-206ENST00000586058 USP6P35125 1406 aa8.29□□□□□ -1.08
LIG3-206ENST00000586058 CPSF1Q10570 1443 aaKnown RBP8.29□□□□□ -1.08
LIG3-206ENST00000586058 HSPA2P54652 639 aa8.28□□□□□ -1.08
LIG3-206ENST00000586058 HNRNPUQ00839 825 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIG3-206ENST00000586058 PROSER2Q86WR7 435 aaPredicted RBP8.28□□□□□ -1.08
LIG3-206ENST00000586058 NGDNQ8NEJ9 315 aaKnown RBP8.28□□□□□ -1.08
LIG3-206ENST00000586058 TTC21AQ8NDW8 1320 aa8.28□□□□□ -1.08
LIG3-206ENST00000586058 TRPM3Q9HCF6 1732 aaPredicted RBP8.27□□□□□ -1.09
LIG3-206ENST00000586058 MARF1Q9Y4F3 1742 aaKnown RBP8.27□□□□□ -1.09
LIG3-206ENST00000586058 POLR3AO14802 1390 aaPredicted RBP8.26□□□□□ -1.09
LIG3-206ENST00000586058 NUTM2FA1L443 756 aa8.26□□□□□ -1.09
LIG3-206ENST00000586058 ATF3P18847 181 aa8.26□□□□□ -1.09
LIG3-206ENST00000586058 PPP2R1AP30153 589 aa8.26□□□□□ -1.09
LIG3-206ENST00000586058 COG3Q96JB2 828 aa8.26□□□□□ -1.09
LIG3-206ENST00000586058 ACEP12821 1306 aa8.26□□□□□ -1.09
LIG3-206ENST00000586058 CDK12Q9NYV4 1490 aaPredicted RBP8.26□□□□□ -1.09
LIG3-206ENST00000586058 INSRP06213 1382 aa8.25□□□□□ -1.09
LIG3-206ENST00000586058 ALS2Q96Q42 1657 aa8.25□□□□□ -1.09
LIG3-206ENST00000586058 FAM208AQ9UK61 1670 aaKnown RBP8.25□□□□□ -1.09
LIG3-206ENST00000586058 GABBR2O75899 941 aa8.25□□□□□ -1.09
LIG3-206ENST00000586058 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIG3-206ENST00000586058 CARD14Q9BXL6 1004 aa8.25□□□□□ -1.09
LIG3-206ENST00000586058 PRR36Q9H6K5 1346 aa8.25□□□□□ -1.09
LIG3-206ENST00000586058 PHRF1Q9P1Y6 1649 aaKnown RBP8.25□□□□□ -1.09
LIG3-206ENST00000586058 BLMP54132 1417 aaPredicted RBP8.24□□□□□ -1.09
LIG3-206ENST00000586058 PLEKHG3A1L390 1219 aa8.24□□□□□ -1.09
LIG3-206ENST00000586058 NEFMP07197 916 aa8.24□□□□□ -1.09
LIG3-206ENST00000586058 TNNT2P45379 298 aaPredicted RBP8.24□□□□□ -1.09
LIG3-206ENST00000586058 GGNBP2Q9H3C7 697 aa8.24□□□□□ -1.09
LIG3-206ENST00000586058 C19orf44Q9H6X5 657 aa8.24□□□□□ -1.09
LIG3-206ENST00000586058 NUDCQ9Y266 331 aa8.24□□□□□ -1.09
LIG3-206ENST00000586058 NHSL1Q5SYE7 1610 aa8.24□□□□□ -1.09
LIG3-206ENST00000586058 TMEM94Q12767 1356 aa8.23□□□□□ -1.09
LIG3-206ENST00000586058 DLG5Q8TDM6 1919 aa8.23□□□□□ -1.09
LIG3-206ENST00000586058 CADPS2Q86UW7 1296 aa8.23□□□□□ -1.09
LIG3-206ENST00000586058 PMFBP1Q8TBY8 1022 aa8.23□□□□□ -1.09
LIG3-206ENST00000586058 PHF8Q9UPP1 1060 aa8.23□□□□□ -1.09
LIG3-206ENST00000586058 FARP1Q9Y4F1 1045 aaPredicted RBP8.23□□□□□ -1.09
LIG3-206ENST00000586058 ZBED9Q6R2W3 1325 aa8.23□□□□□ -1.09
LIG3-206ENST00000586058 OVOS2A0A0J9YW53 1432 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 OVOS2Q6IE36 1432 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 SMG6Q86US8 1419 aaKnown RBP8.22□□□□□ -1.09
LIG3-206ENST00000586058 C1orf167Q5SNV9 1468 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 ESCO1Q5FWF5 840 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 PNNQ9H307 717 aaKnown RBP8.22□□□□□ -1.09
LIG3-206ENST00000586058 ABCA3Q99758 1704 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 TTC21BQ7Z4L5 1316 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 VIRMAQ69YN4 1812 aaKnown RBP8.22□□□□□ -1.09
LIG3-206ENST00000586058 AATKQ6ZMQ8 1374 aa8.22□□□□□ -1.09
LIG3-206ENST00000586058 MST1RQ04912 1400 aa8.21□□□□□ -1.09
LIG3-206ENST00000586058 FYB1O15117 783 aa8.21□□□□□ -1.1
LIG3-206ENST00000586058 PAK3O75914 559 aaPredicted RBP8.21□□□□□ -1.1
LIG3-206ENST00000586058 PSME1Q06323 249 aa8.21□□□□□ -1.1
LIG3-206ENST00000586058 CCDC184Q52MB2 194 aa8.21□□□□□ -1.1
LIG3-206ENST00000586058 PNISRQ8TF01 805 aaKnown RBP8.21□□□□□ -1.1
LIG3-206ENST00000586058 CRYBG1Q9Y4K1 1723 aa8.2□□□□□ -1.1
LIG3-206ENST00000586058 RGPD5Q99666 1765 aa8.2□□□□□ -1.1
LIG3-206ENST00000586058 NME9Q86XW9 330 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms