RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 POGKQ9P215 609 aa14.07□□□□□ -0.16
LIG3-203ENST00000585370 SPATA31A3Q5VYP0 1347 aa14.07□□□□□ -0.16
LIG3-203ENST00000585370 PARD3Q8TEW0 1356 aa14.07□□□□□ -0.16
LIG3-203ENST00000585370 DLC1Q96QB1 1528 aa14.06□□□□□ -0.16
LIG3-203ENST00000585370 PRAM1Q96QH2 718 aa14.06□□□□□ -0.16
LIG3-203ENST00000585370 FMN2Q9NZ56 1722 aa14.06□□□□□ -0.16
LIG3-203ENST00000585370 SAFB2Q14151 953 aaKnown RBP eCLIP14.05□□□□□ -0.16
LIG3-203ENST00000585370 NLRP13Q86W25 1043 aa14.05□□□□□ -0.16
LIG3-203ENST00000585370 TMC1Q8TDI8 760 aa14.05□□□□□ -0.16
LIG3-203ENST00000585370 PHF8Q9UPP1 1060 aa14.05□□□□□ -0.16
LIG3-203ENST00000585370 NINLQ9Y2I6 1382 aa14.05□□□□□ -0.16
LIG3-203ENST00000585370 GJD4Q96KN9 370 aaPredicted RBP14.04□□□□□ -0.16
LIG3-203ENST00000585370 ATAD2Q6PL18 1390 aa14.04□□□□□ -0.16
LIG3-203ENST00000585370 QRICH2Q9H0J4 1663 aa14.04□□□□□ -0.16
LIG3-203ENST00000585370 RGPD8O14715 1765 aaPredicted RBP14.04□□□□□ -0.16
LIG3-203ENST00000585370 ARHGEF28Q8N1W1 1705 aaKnown RBP14.03□□□□□ -0.16
LIG3-203ENST00000585370 MARF1Q9Y4F3 1742 aaKnown RBP14.03□□□□□ -0.16
LIG3-203ENST00000585370 AMER1Q5JTC6 1135 aaPredicted RBP14.02□□□□□ -0.17
LIG3-203ENST00000585370 UNC5CLQ8IV45 518 aa14.02□□□□□ -0.17
LIG3-203ENST00000585370 CABLES1Q8TDN4 633 aa14.02□□□□□ -0.17
LIG3-203ENST00000585370 KIF1AQ12756 1690 aa14.01□□□□□ -0.17
LIG3-203ENST00000585370 PSME1Q06323 249 aa14.01□□□□□ -0.17
LIG3-203ENST00000585370 CCDC184Q52MB2 194 aa14.01□□□□□ -0.17
LIG3-203ENST00000585370 SLIT2O94813 1529 aa14□□□□□ -0.17
LIG3-203ENST00000585370 PMFBP1Q8TBY8 1022 aa14□□□□□ -0.17
LIG3-203ENST00000585370 TNS3Q68CZ2 1445 aa13.99□□□□□ -0.17
LIG3-203ENST00000585370 SBNO1A3KN83 1393 aa13.99□□□□□ -0.17
LIG3-203ENST00000585370 PLEKHG5O94827 1062 aa13.99□□□□□ -0.17
LIG3-203ENST00000585370 CC2D1BQ5T0F9 858 aaKnown RBP13.99□□□□□ -0.17
LIG3-203ENST00000585370 FAM9BQ8IZU0 186 aa13.99□□□□□ -0.17
LIG3-203ENST00000585370 PNISRQ8TF01 805 aaKnown RBP13.99□□□□□ -0.17
LIG3-203ENST00000585370 INSRP06213 1382 aa13.97□□□□□ -0.17
LIG3-203ENST00000585370 SRPK2P78362 688 aaKnown RBP13.97□□□□□ -0.17
LIG3-203ENST00000585370 HNRNPUQ00839 825 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIG3-203ENST00000585370 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
LIG3-203ENST00000585370 MYOM1P52179 1685 aa13.97□□□□□ -0.17
LIG3-203ENST00000585370 USP32Q8NFA0 1604 aa13.97□□□□□ -0.17
LIG3-203ENST00000585370 ANKRD36BQ8N2N9 1353 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 MINK1Q8N4C8 1332 aaPredicted RBP13.96□□□□□ -0.17
LIG3-203ENST00000585370 TULP4Q9NRJ4 1543 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.96□□□□□ -0.17
LIG3-203ENST00000585370 FAM83GA6ND36 823 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 HAP1P54257 671 aaPredicted RBP13.96□□□□□ -0.17
LIG3-203ENST00000585370 CNGB1Q14028 1251 aaPredicted RBP13.96□□□□□ -0.17
LIG3-203ENST00000585370 CDK19Q9BWU1 502 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 CARD14Q9BXL6 1004 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 SLC12A5Q9H2X9 1139 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 TERF2IPQ9NYB0 399 aa13.96□□□□□ -0.17
LIG3-203ENST00000585370 ANKARQ7Z5J8 1434 aa13.96□□□□□ -0.18
LIG3-203ENST00000585370 GLI3P10071 1580 aa13.96□□□□□ -0.18
LIG3-203ENST00000585370 PRR36Q9H6K5 1346 aa13.95□□□□□ -0.18
LIG3-203ENST00000585370 VPS72Q15906 364 aa13.95□□□□□ -0.18
LIG3-203ENST00000585370 CCDC125Q86Z20 511 aa13.95□□□□□ -0.18
LIG3-203ENST00000585370 CABP2Q9NPB3 220 aa13.95□□□□□ -0.18
LIG3-203ENST00000585370 ARHGEF10O15013 1369 aa13.95□□□□□ -0.18
LIG3-203ENST00000585370 NSD2O96028 1365 aa13.95□□□□□ -0.18
LIG3-203ENST00000585370 CGNL1Q0VF96 1302 aa13.94□□□□□ -0.18
LIG3-203ENST00000585370 WASLO00401 505 aaPredicted RBP13.94□□□□□ -0.18
LIG3-203ENST00000585370 ADGRB2O60241 1585 aa13.94□□□□□ -0.18
LIG3-203ENST00000585370 ONECUT3O60422 494 aaPredicted RBP13.94□□□□□ -0.18
LIG3-203ENST00000585370 PPP2R1AP30153 589 aa13.93□□□□□ -0.18
LIG3-203ENST00000585370 HDGFL2Q7Z4V5 671 aaPredicted RBP13.93□□□□□ -0.18
LIG3-203ENST00000585370 SEPT12Q8IYM1 358 aa13.93□□□□□ -0.18
LIG3-203ENST00000585370 ZBED9Q6R2W3 1325 aa13.92□□□□□ -0.18
LIG3-203ENST00000585370 GTF3C3Q9Y5Q9 886 aa13.91□□□□□ -0.18
LIG3-203ENST00000585370 NSD3Q9BZ95 1437 aa13.9□□□□□ -0.18
LIG3-203ENST00000585370 ZRANB1Q9UGI0 708 aa13.9□□□□□ -0.18
LIG3-203ENST00000585370 CCDC9Q9Y3X0 531 aaKnown RBP13.9□□□□□ -0.18
LIG3-203ENST00000585370 BRWD3Q6RI45 1802 aa13.9□□□□□ -0.18
LIG3-203ENST00000585370 ABCA3Q99758 1704 aa13.9□□□□□ -0.18
LIG3-203ENST00000585370 TRPM3Q9HCF6 1732 aaPredicted RBP13.9□□□□□ -0.18
LIG3-203ENST00000585370 NWD2Q9ULI1 1742 aa13.9□□□□□ -0.18
LIG3-203ENST00000585370 PLCH1Q4KWH8 1693 aa13.89□□□□□ -0.19
LIG3-203ENST00000585370 MORC1Q86VD1 984 aa13.89□□□□□ -0.19
LIG3-203ENST00000585370 NGDNQ8NEJ9 315 aaKnown RBP13.89□□□□□ -0.19
LIG3-203ENST00000585370 BTG4Q9NY30 223 aa13.89□□□□□ -0.19
LIG3-203ENST00000585370 DEFB132Q7Z7B7 95 aa13.88□□□□□ -0.19
LIG3-203ENST00000585370 NUDT16Q96DE0 195 aaKnown RBP13.88□□□□□ -0.19
LIG3-203ENST00000585370 BLMP54132 1417 aaPredicted RBP13.88□□□□□ -0.19
LIG3-203ENST00000585370 ALS2Q96Q42 1657 aa13.88□□□□□ -0.19
LIG3-203ENST00000585370 PAK3O75914 559 aaPredicted RBP13.87□□□□□ -0.19
LIG3-203ENST00000585370 KRT27Q7Z3Y8 459 aa13.87□□□□□ -0.19
LIG3-203ENST00000585370 ZNF692Q9BU19 519 aaPredicted RBP13.87□□□□□ -0.19
LIG3-203ENST00000585370 CABP1Q9NZU7 370 aa13.87□□□□□ -0.19
LIG3-203ENST00000585370 CCDC61Q9Y6R9 512 aa13.87□□□□□ -0.19
LIG3-203ENST00000585370 FAM98CQ17RN3 349 aaKnown RBP13.86□□□□□ -0.19
LIG3-203ENST00000585370 ATP7BP35670 1465 aa13.86□□□□□ -0.19
LIG3-203ENST00000585370 A0A1W2PP64 1363 aa13.85□□□□□ -0.19
LIG3-203ENST00000585370 WDR43Q15061 677 aaKnown RBP eCLIP13.85□□□□□ -0.19
LIG3-203ENST00000585370 POLR3AO14802 1390 aaPredicted RBP13.84□□□□□ -0.19
LIG3-203ENST00000585370 NRAPQ86VF7 1730 aa13.84□□□□□ -0.19
LIG3-203ENST00000585370 PDE3BQ13370 1112 aa13.83□□□□□ -0.2
LIG3-203ENST00000585370 SF3B2Q13435 895 aaKnown RBP13.83□□□□□ -0.2
LIG3-203ENST00000585370 NGEFQ8N5V2 710 aa13.83□□□□□ -0.2
LIG3-203ENST00000585370 CFAP53Q96M91 514 aa13.83□□□□□ -0.2
LIG3-203ENST00000585370 SPATA31A5Q5VU36 1347 aa13.83□□□□□ -0.2
LIG3-203ENST00000585370 SPATA31A7Q8IWB4 1347 aa13.83□□□□□ -0.2
LIG3-203ENST00000585370 COL14A1Q05707 1796 aaKnown RBP13.82□□□□□ -0.2
LIG3-203ENST00000585370 A0A0G2JS52 829 aa13.82□□□□□ -0.2
LIG3-203ENST00000585370 MYT1Q01538 1121 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms