RNA–Protein interactions for RNA: ENST00000584887.1

TOP3A-219, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 545 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-219ENST00000584887 L3MBTL2Q969R5 705 aa29.45■■■□□ 2.31
TOP3A-219ENST00000584887 PRDM11Q9NQV5 511 aa29.45■■■□□ 2.31
TOP3A-219ENST00000584887 CENPJQ9HC77 1338 aaPredicted RBP29.45■■■□□ 2.3
TOP3A-219ENST00000584887 BRWD3Q6RI45 1802 aa29.44■■■□□ 2.3
TOP3A-219ENST00000584887 SRPK2P78362 688 aaKnown RBP29.44■■■□□ 2.3
TOP3A-219ENST00000584887 NUTM2GQ5VZR2 741 aa29.44■■■□□ 2.3
TOP3A-219ENST00000584887 SIN3AQ96ST3 1273 aa29.44■■■□□ 2.3
TOP3A-219ENST00000584887 CCDC61Q9Y6R9 512 aa29.44■■■□□ 2.3
TOP3A-219ENST00000584887 COL14A1Q05707 1796 aaKnown RBP29.44■■■□□ 2.3
TOP3A-219ENST00000584887 ACEP12821 1306 aa29.44■■■□□ 2.3
TOP3A-219ENST00000584887 NEUROD1Q13562 356 aa29.43■■■□□ 2.3
TOP3A-219ENST00000584887 CCDC125Q86Z20 511 aa29.43■■■□□ 2.3
TOP3A-219ENST00000584887 TOPAZ1Q8N9V7 1692 aa29.43■■■□□ 2.3
TOP3A-219ENST00000584887 NRAPQ86VF7 1730 aa29.42■■■□□ 2.3
TOP3A-219ENST00000584887 CRYBG1Q9Y4K1 1723 aa29.41■■■□□ 2.3
TOP3A-219ENST00000584887 NBPF8Q3BBV2 869 aa29.4■■■□□ 2.3
TOP3A-219ENST00000584887 POLR3AO14802 1390 aaPredicted RBP29.39■■■□□ 2.3
TOP3A-219ENST00000584887 FAM98CQ17RN3 349 aaKnown RBP29.39■■■□□ 2.3
TOP3A-219ENST00000584887 PLEKHG3A1L390 1219 aa29.38■■■□□ 2.29
TOP3A-219ENST00000584887 KRT27Q7Z3Y8 459 aa29.38■■■□□ 2.29
TOP3A-219ENST00000584887 CABP2Q9NPB3 220 aa29.38■■■□□ 2.29
TOP3A-219ENST00000584887 QRICH2Q9H0J4 1663 aa29.37■■■□□ 2.29
TOP3A-219ENST00000584887 KIAA0232Q92628 1395 aa29.37■■■□□ 2.29
TOP3A-219ENST00000584887 BLMP54132 1417 aaPredicted RBP29.37■■■□□ 2.29
TOP3A-219ENST00000584887 ONECUT3O60422 494 aaPredicted RBP29.36■■■□□ 2.29
TOP3A-219ENST00000584887 CHRNA2Q15822 529 aa29.36■■■□□ 2.29
TOP3A-219ENST00000584887 PPIP5K1Q6PFW1 1433 aa29.36■■■□□ 2.29
TOP3A-219ENST00000584887 EP400Q96L91 3159 aa29.35■■■□□ 2.29
TOP3A-219ENST00000584887 ZC3H6P61129 1189 aaKnown RBP29.35■■■□□ 2.29
TOP3A-219ENST00000584887 SF3B2Q13435 895 aaKnown RBP29.34■■■□□ 2.29
TOP3A-219ENST00000584887 ZRANB1Q9UGI0 708 aa29.34■■■□□ 2.29
TOP3A-219ENST00000584887 PHRF1Q9P1Y6 1649 aaKnown RBP29.34■■■□□ 2.29
TOP3A-219ENST00000584887 ABTB2Q8N961 1025 aa29.33■■■□□ 2.29
TOP3A-219ENST00000584887 SPATA31A5Q5VU36 1347 aa29.32■■■□□ 2.28
TOP3A-219ENST00000584887 SPATA31A7Q8IWB4 1347 aa29.32■■■□□ 2.28
TOP3A-219ENST00000584887 STRN4Q9NRL3 753 aa29.32■■■□□ 2.28
TOP3A-219ENST00000584887 ROCK2O75116 1388 aaKnown RBP29.3■■■□□ 2.28
TOP3A-219ENST00000584887 DEFB132Q7Z7B7 95 aa29.3■■■□□ 2.28
TOP3A-219ENST00000584887 TRPM1Q7Z4N2 1603 aa29.29■■■□□ 2.28
TOP3A-219ENST00000584887 CABP1Q9NZU7 370 aa29.26■■■□□ 2.27
TOP3A-219ENST00000584887 EVC2Q86UK5 1308 aa29.25■■■□□ 2.27
TOP3A-219ENST00000584887 NRKQ7Z2Y5 1582 aa29.25■■■□□ 2.27
TOP3A-219ENST00000584887 EVA1CP58658 441 aa29.24■■■□□ 2.27
TOP3A-219ENST00000584887 FAM182BQ5T319 152 aa29.23■■■□□ 2.27
TOP3A-219ENST00000584887 NLRP13Q86W25 1043 aa29.23■■■□□ 2.27
TOP3A-219ENST00000584887 USP19O94966 1318 aa29.22■■■□□ 2.27
TOP3A-219ENST00000584887 SPATA31A1Q5TZJ5 1347 aa29.22■■■□□ 2.27
TOP3A-219ENST00000584887 USP35Q9P2H5 1018 aa29.22■■■□□ 2.27
TOP3A-219ENST00000584887 ZBTB7CA1YPR0 619 aa29.2■■■□□ 2.26
TOP3A-219ENST00000584887 USP6P35125 1406 aa29.2■■■□□ 2.26
TOP3A-219ENST00000584887 THSD7AQ9UPZ6 1657 aa29.19■■■□□ 2.26
TOP3A-219ENST00000584887 SSH2Q76I76 1423 aa29.18■■■□□ 2.26
TOP3A-219ENST00000584887 BRD4O60885 1362 aaPredicted RBP29.17■■■□□ 2.26
TOP3A-219ENST00000584887 CPDO75976 1380 aa29.17■■■□□ 2.26
TOP3A-219ENST00000584887 GCP02774 474 aa29.17■■■□□ 2.26
TOP3A-219ENST00000584887 BAG6P46379 1132 aa29.17■■■□□ 2.26
TOP3A-219ENST00000584887 NLRP6P59044 892 aa29.16■■■□□ 2.26
TOP3A-219ENST00000584887 CAMTA1Q9Y6Y1 1673 aa29.15■■■□□ 2.26
TOP3A-219ENST00000584887 LARP1Q6PKG0 1096 aaKnown RBP29.14■■■□□ 2.26
TOP3A-219ENST00000584887 LMO7Q8WWI1 1683 aa29.12■■■□□ 2.25
TOP3A-219ENST00000584887 TONSLQ96HA7 1378 aa29.11■■■□□ 2.25
TOP3A-219ENST00000584887 TCP11L2Q8N4U5 519 aa29.09■■■□□ 2.25
TOP3A-219ENST00000584887 CARD11Q9BXL7 1154 aa29.09■■■□□ 2.25
TOP3A-219ENST00000584887 RGPD1P0DJD0 1748 aa29.08■■■□□ 2.25
TOP3A-219ENST00000584887 BARGINQ6ZT62 677 aa29.08■■■□□ 2.25
TOP3A-219ENST00000584887 PIK3C2AO00443 1686 aa29.07■■■□□ 2.24
TOP3A-219ENST00000584887 EN1Q05925 392 aaPredicted RBP29.07■■■□□ 2.24
TOP3A-219ENST00000584887 COL5A2P05997 1499 aaPredicted RBP29.06■■■□□ 2.24
TOP3A-219ENST00000584887 PDE3BQ13370 1112 aa29.06■■■□□ 2.24
TOP3A-219ENST00000584887 SLIT3O75094 1523 aa29.05■■■□□ 2.24
TOP3A-219ENST00000584887 TTC21BQ7Z4L5 1316 aa29.05■■■□□ 2.24
TOP3A-219ENST00000584887 SOX12O15370 315 aa29.05■■■□□ 2.24
TOP3A-219ENST00000584887 FAM196AQ6ZSG2 479 aa29.05■■■□□ 2.24
TOP3A-219ENST00000584887 ZNF692Q9BU19 519 aaPredicted RBP29.05■■■□□ 2.24
TOP3A-219ENST00000584887 TRIM37O94972 964 aa29.04■■■□□ 2.24
TOP3A-219ENST00000584887 AATKQ6ZMQ8 1374 aa29.02■■■□□ 2.24
TOP3A-219ENST00000584887 PSDA5PKW4 1024 aaPredicted RBP29.02■■■□□ 2.24
TOP3A-219ENST00000584887 AKAP12Q02952 1782 aa29.02■■■□□ 2.24
TOP3A-219ENST00000584887 KTN1Q86UP2 1357 aaKnown RBP29.01■■■□□ 2.24
TOP3A-219ENST00000584887 TNS1Q9HBL0 1735 aaKnown RBP29■■■□□ 2.23
TOP3A-219ENST00000584887 THRAP3Q9Y2W1 955 aaKnown RBP29■■■□□ 2.23
TOP3A-219ENST00000584887 CRB1P82279 1406 aa29■■■□□ 2.23
TOP3A-219ENST00000584887 TTC21AQ8NDW8 1320 aa28.99■■■□□ 2.23
TOP3A-219ENST00000584887 SBNO2Q9Y2G9 1366 aa28.99■■■□□ 2.23
TOP3A-219ENST00000584887 TMC1Q8TDI8 760 aa28.98■■■□□ 2.23
TOP3A-219ENST00000584887 CPSF1Q10570 1443 aaKnown RBP28.97■■■□□ 2.23
TOP3A-219ENST00000584887 TOM1L2Q6ZVM7 507 aa28.97■■■□□ 2.23
TOP3A-219ENST00000584887 DISP2A7MBM2 1401 aa28.96■■■□□ 2.23
TOP3A-219ENST00000584887 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.96■■■□□ 2.23
TOP3A-219ENST00000584887 KCNH5Q8NCM2 988 aa28.96■■■□□ 2.23
TOP3A-219ENST00000584887 SRCAPQ6ZRS2 3230 aa28.95■■■□□ 2.23
TOP3A-219ENST00000584887 APBA3O96018 575 aa28.95■■■□□ 2.22
TOP3A-219ENST00000584887 EZH2Q15910 746 aaKnown RBP28.95■■■□□ 2.22
TOP3A-219ENST00000584887 TRIM26Q12899 539 aaPredicted RBP28.94■■■□□ 2.22
TOP3A-219ENST00000584887 ARHGEF25Q86VW2 580 aa28.93■■■□□ 2.22
TOP3A-219ENST00000584887 AXIN2Q9Y2T1 843 aa28.93■■■□□ 2.22
TOP3A-219ENST00000584887 CSB-PGBD3P0DP91 1061 aa28.92■■■□□ 2.22
TOP3A-219ENST00000584887 COL18A1P39060 1754 aa28.92■■■□□ 2.22
TOP3A-219ENST00000584887 MON2Q7Z3U7 1717 aa28.91■■■□□ 2.22
TOP3A-219ENST00000584887 PARP4Q9UKK3 1724 aaKnown RBP28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 148.3 ms