RNA–Protein interactions for RNA: ENST00000582892.1

NF1-222, Transcript of neurofibromin 1, human

TSL 4

Gene NF1, Length 462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-222	ENST00000582892	SPHKAP	Q2M3C7	1700 aa		11.21	□□□□□ -0.61
NF1-222	ENST00000582892	SOS2	Q07890	1332 aa	Predicted RBP	11.21	□□□□□ -0.61
NF1-222	ENST00000582892	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
NF1-222	ENST00000582892	LHX8	Q68G74	356 aa		11.2	□□□□□ -0.62
NF1-222	ENST00000582892	GJD4	Q96KN9	370 aa	Predicted RBP	11.2	□□□□□ -0.62
NF1-222	ENST00000582892	ANKRD30A	Q9BXX3	1397 aa		11.19	□□□□□ -0.62
NF1-222	ENST00000582892	PSEN1	P49768	467 aa		11.19	□□□□□ -0.62
NF1-222	ENST00000582892	HDGF	P51858	240 aa	Known RBP	11.19	□□□□□ -0.62
NF1-222	ENST00000582892	XPC	Q01831	940 aa	Predicted RBP	11.18	□□□□□ -0.62
NF1-222	ENST00000582892	RTN4	Q9NQC3	1192 aa	Known RBP	11.18	□□□□□ -0.62
NF1-222	ENST00000582892	PXDN	Q92626	1479 aa		11.18	□□□□□ -0.62
NF1-222	ENST00000582892	VPS8	Q8N3P4	1428 aa		11.18	□□□□□ -0.62
NF1-222	ENST00000582892	IQGAP3	Q86VI3	1631 aa		11.17	□□□□□ -0.62
NF1-222	ENST00000582892	ASTL	Q6HA08	431 aa	Predicted RBP	11.17	□□□□□ -0.62
NF1-222	ENST00000582892	TMEM106C	Q9BVX2	250 aa		11.17	□□□□□ -0.62
NF1-222	ENST00000582892	SLIT2	O94813	1529 aa		11.16	□□□□□ -0.62
NF1-222	ENST00000582892	RGL2	O15211	777 aa		11.16	□□□□□ -0.62
NF1-222	ENST00000582892	RNF25	Q96BH1	459 aa	Predicted RBP	11.16	□□□□□ -0.62
NF1-222	ENST00000582892	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.16	□□□□□ -0.62
NF1-222	ENST00000582892	ADGRL2	O95490	1459 aa		11.16	□□□□□ -0.62
NF1-222	ENST00000582892	PLCH1	Q4KWH8	1693 aa		11.16	□□□□□ -0.62
NF1-222	ENST00000582892	TTLL13P	A6NNM8	815 aa		11.15	□□□□□ -0.62
NF1-222	ENST00000582892	YY1	P25490	414 aa		11.15	□□□□□ -0.62
NF1-222	ENST00000582892	GOLGA2	Q08379	1002 aa		11.15	□□□□□ -0.62
NF1-222	ENST00000582892	R3HDM1	Q15032	1099 aa	Known RBP	11.15	□□□□□ -0.62
NF1-222	ENST00000582892	SEPT12	Q8IYM1	358 aa		11.15	□□□□□ -0.62
NF1-222	ENST00000582892	ANKRD50	Q9ULJ7	1429 aa		11.15	□□□□□ -0.62
NF1-222	ENST00000582892	ROBO2	Q9HCK4	1378 aa		11.15	□□□□□ -0.63
NF1-222	ENST00000582892	ATMIN	O43313	823 aa	Predicted RBP	11.14	□□□□□ -0.63
NF1-222	ENST00000582892	TNS1	Q9HBL0	1735 aa	Known RBP	11.14	□□□□□ -0.63
NF1-222	ENST00000582892	USP32	Q8NFA0	1604 aa		11.13	□□□□□ -0.63
NF1-222	ENST00000582892	SF3B2	Q13435	895 aa	Known RBP	11.13	□□□□□ -0.63
NF1-222	ENST00000582892	TRPC6	Q9Y210	931 aa		11.13	□□□□□ -0.63
NF1-222	ENST00000582892	CAMTA1	Q9Y6Y1	1673 aa		11.13	□□□□□ -0.63
NF1-222	ENST00000582892	EN1	Q05925	392 aa	Predicted RBP	11.12	□□□□□ -0.63
NF1-222	ENST00000582892	UNC5CL	Q8IV45	518 aa		11.12	□□□□□ -0.63
NF1-222	ENST00000582892	NEXMIF	Q5QGS0	1516 aa		11.12	□□□□□ -0.63
NF1-222	ENST00000582892	CEP350	Q5VT06	3117 aa		11.12	□□□□□ -0.63
NF1-222	ENST00000582892	RGPD1	P0DJD0	1748 aa		11.12	□□□□□ -0.63
NF1-222	ENST00000582892	ABCA3	Q99758	1704 aa		11.12	□□□□□ -0.63
NF1-222	ENST00000582892	FAM182B	Q5T319	152 aa		11.11	□□□□□ -0.63
NF1-222	ENST00000582892	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.1	□□□□□ -0.63
NF1-222	ENST00000582892	SLC39A7	Q92504	469 aa		11.1	□□□□□ -0.63
NF1-222	ENST00000582892	ZFP91	Q96JP5	570 aa	Predicted RBP	11.1	□□□□□ -0.63
NF1-222	ENST00000582892	TRIM35	Q9UPQ4	493 aa		11.1	□□□□□ -0.63
NF1-222	ENST00000582892	FOXO3	O43524	673 aa		11.09	□□□□□ -0.63
NF1-222	ENST00000582892	ATN1	P54259	1190 aa	Predicted RBP	11.09	□□□□□ -0.63
NF1-222	ENST00000582892	KRT27	Q7Z3Y8	459 aa		11.09	□□□□□ -0.63
NF1-222	ENST00000582892	NWD2	Q9ULI1	1742 aa		11.09	□□□□□ -0.63
NF1-222	ENST00000582892	CLTCL1	P53675	1640 aa		11.09	□□□□□ -0.63
NF1-222	ENST00000582892	BAG6	P46379	1132 aa		11.08	□□□□□ -0.64
NF1-222	ENST00000582892	MKRN3	Q13064	507 aa	Known RBP	11.08	□□□□□ -0.64
NF1-222	ENST00000582892	ZNF326	Q5BKZ1	582 aa	Known RBP	11.08	□□□□□ -0.64
NF1-222	ENST00000582892	ESCO1	Q5FWF5	840 aa		11.08	□□□□□ -0.64
NF1-222	ENST00000582892	IER5L	Q5T953	404 aa		11.08	□□□□□ -0.64
NF1-222	ENST00000582892	NRAP	Q86VF7	1730 aa		11.08	□□□□□ -0.64
NF1-222	ENST00000582892	CDC42BPG	Q6DT37	1551 aa		11.07	□□□□□ -0.64
NF1-222	ENST00000582892	NUTM2F	A1L443	756 aa		11.07	□□□□□ -0.64
NF1-222	ENST00000582892	STK25	O00506	426 aa		11.07	□□□□□ -0.64
NF1-222	ENST00000582892	POTEI	P0CG38	1075 aa		11.07	□□□□□ -0.64
NF1-222	ENST00000582892	C7	P10643	843 aa		11.07	□□□□□ -0.64
NF1-222	ENST00000582892	NPHP3	Q7Z494	1330 aa		11.07	□□□□□ -0.64
NF1-222	ENST00000582892	RGPD8	O14715	1765 aa	Predicted RBP	11.06	□□□□□ -0.64
NF1-222	ENST00000582892	CABLES1	Q8TDN4	633 aa		11.06	□□□□□ -0.64
NF1-222	ENST00000582892	CCDC9	Q9Y3X0	531 aa	Known RBP	11.06	□□□□□ -0.64
NF1-222	ENST00000582892	VPS72	Q15906	364 aa		11.05	□□□□□ -0.64
NF1-222	ENST00000582892	EZH2	Q15910	746 aa	Known RBP	11.05	□□□□□ -0.64
NF1-222	ENST00000582892	NUP188	Q5SRE5	1749 aa		11.05	□□□□□ -0.64
NF1-222	ENST00000582892	RREB1	Q92766	1687 aa		11.04	□□□□□ -0.64
NF1-222	ENST00000582892		A0A0G2JS52	829 aa		11.04	□□□□□ -0.64
NF1-222	ENST00000582892	ONECUT3	O60422	494 aa	Predicted RBP	11.04	□□□□□ -0.64
NF1-222	ENST00000582892	MYT1	Q01538	1121 aa		11.04	□□□□□ -0.64
NF1-222	ENST00000582892	FAM50A	Q14320	339 aa	Known RBP	11.04	□□□□□ -0.64
NF1-222	ENST00000582892	FAM98C	Q17RN3	349 aa	Known RBP	11.04	□□□□□ -0.64
NF1-222	ENST00000582892	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.04	□□□□□ -0.64
NF1-222	ENST00000582892	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.04	□□□□□ -0.64
NF1-222	ENST00000582892	CABP2	Q9NPB3	220 aa		11.04	□□□□□ -0.64
NF1-222	ENST00000582892	STK24	Q9Y6E0	443 aa		11.04	□□□□□ -0.64
NF1-222	ENST00000582892	KIF1B	O60333	1816 aa		11.03	□□□□□ -0.64
NF1-222	ENST00000582892	FMN2	Q9NZ56	1722 aa		11.03	□□□□□ -0.64
NF1-222	ENST00000582892	SPATA31A3	Q5VYP0	1347 aa		11.03	□□□□□ -0.64
NF1-222	ENST00000582892	IFFO2	Q5TF58	517 aa		11.02	□□□□□ -0.65
NF1-222	ENST00000582892	NUP155	O75694	1391 aa		11.02	□□□□□ -0.65
NF1-222	ENST00000582892	THSD7A	Q9UPZ6	1657 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	DISP2	A7MBM2	1401 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	NAIP	Q13075	1403 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	PRAG1	Q86YV5	1406 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	SEC24B	O95487	1268 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	HS6ST3	Q8IZP7	471 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	HFM1	A2PYH4	1435 aa		11.01	□□□□□ -0.65
NF1-222	ENST00000582892	METRN	Q9UJH8	293 aa		11	□□□□□ -0.65
NF1-222	ENST00000582892	KIF1A	Q12756	1690 aa		11	□□□□□ -0.65
NF1-222	ENST00000582892	GOLGB1	Q14789	3259 aa	Known RBP	11	□□□□□ -0.65
NF1-222	ENST00000582892	PPL	O60437	1756 aa		10.99	□□□□□ -0.65
NF1-222	ENST00000582892	SENP3-EIF4A1	A0A087X0R7	540 aa		10.99	□□□□□ -0.65
NF1-222	ENST00000582892	PELP1	Q8IZL8	1130 aa	Known RBP	10.99	□□□□□ -0.65
NF1-222	ENST00000582892	CAMKK2	Q96RR4	588 aa		10.99	□□□□□ -0.65
NF1-222	ENST00000582892	IFT172	Q9UG01	1749 aa		10.98	□□□□□ -0.65
NF1-222	ENST00000582892	SOX12	O15370	315 aa		10.98	□□□□□ -0.65
NF1-222	ENST00000582892	WAPL	Q7Z5K2	1190 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms