RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 POLR3AO14802 1390 aaPredicted RBP23.58■■□□□ 1.37
SREBF1-219ENST00000580540 BCL9LQ86UU0 1499 aa23.56■■□□□ 1.36
SREBF1-219ENST00000580540 UNC5CLQ8IV45 518 aa23.56■■□□□ 1.36
SREBF1-219ENST00000580540 ALS2Q96Q42 1657 aa23.56■■□□□ 1.36
SREBF1-219ENST00000580540 ATRNO75882 1429 aa23.54■■□□□ 1.36
SREBF1-219ENST00000580540 FAM83GA6ND36 823 aa23.54■■□□□ 1.36
SREBF1-219ENST00000580540 ABTB2Q8N961 1025 aa23.54■■□□□ 1.36
SREBF1-219ENST00000580540 CDK12Q9NYV4 1490 aaPredicted RBP23.53■■□□□ 1.36
SREBF1-219ENST00000580540 CCDC9Q9Y3X0 531 aaKnown RBP23.52■■□□□ 1.36
SREBF1-219ENST00000580540 ABCA3Q99758 1704 aa23.52■■□□□ 1.36
SREBF1-219ENST00000580540 SLIT2O94813 1529 aa23.52■■□□□ 1.36
SREBF1-219ENST00000580540 RGS12O14924 1447 aa23.51■■□□□ 1.35
SREBF1-219ENST00000580540 CCER1Q8TC90 406 aaPredicted RBP23.51■■□□□ 1.35
SREBF1-219ENST00000580540 GJD4Q96KN9 370 aaPredicted RBP23.51■■□□□ 1.35
SREBF1-219ENST00000580540 CLSPNQ9HAW4 1339 aa23.49■■□□□ 1.35
SREBF1-219ENST00000580540 PRDM11Q9NQV5 511 aa23.48■■□□□ 1.35
SREBF1-219ENST00000580540 BTG4Q9NY30 223 aa23.48■■□□□ 1.35
SREBF1-219ENST00000580540 ZC3H6P61129 1189 aaKnown RBP23.47■■□□□ 1.35
SREBF1-219ENST00000580540 ATAD2Q6PL18 1390 aa23.47■■□□□ 1.35
SREBF1-219ENST00000580540 ST20-MTHFSA0A0A6YYL1 179 aa23.46■■□□□ 1.35
SREBF1-219ENST00000580540 NLRP13Q86W25 1043 aa23.46■■□□□ 1.35
SREBF1-219ENST00000580540 TMC1Q8TDI8 760 aa23.46■■□□□ 1.35
SREBF1-219ENST00000580540 SBNO2Q9Y2G9 1366 aa23.46■■□□□ 1.35
SREBF1-219ENST00000580540 USP6P35125 1406 aa23.45■■□□□ 1.34
SREBF1-219ENST00000580540 PLCH1Q4KWH8 1693 aa23.44■■□□□ 1.34
SREBF1-219ENST00000580540 CHRNA2Q15822 529 aa23.44■■□□□ 1.34
SREBF1-219ENST00000580540 VPS72Q15906 364 aa23.44■■□□□ 1.34
SREBF1-219ENST00000580540 ZNF692Q9BU19 519 aaPredicted RBP23.44■■□□□ 1.34
SREBF1-219ENST00000580540 TIMELESSQ9UNS1 1208 aa23.44■■□□□ 1.34
SREBF1-219ENST00000580540 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.44■■□□□ 1.34
SREBF1-219ENST00000580540 KIAA0232Q92628 1395 aa23.43■■□□□ 1.34
SREBF1-219ENST00000580540 NLRP6P59044 892 aa23.43■■□□□ 1.34
SREBF1-219ENST00000580540 UPF1Q92900 1129 aaKnown RBP eCLIP23.43■■□□□ 1.34
SREBF1-219ENST00000580540 BRD4O60885 1362 aaPredicted RBP23.42■■□□□ 1.34
SREBF1-219ENST00000580540 CRYBG1Q9Y4K1 1723 aa23.42■■□□□ 1.34
SREBF1-219ENST00000580540 COL14A1Q05707 1796 aaKnown RBP23.41■■□□□ 1.34
SREBF1-219ENST00000580540 NWD2Q9ULI1 1742 aa23.41■■□□□ 1.34
SREBF1-219ENST00000580540 ZBTB7CA1YPR0 619 aa23.4■■□□□ 1.34
SREBF1-219ENST00000580540 TTC21BQ7Z4L5 1316 aa23.39■■□□□ 1.34
SREBF1-219ENST00000580540 A0A0G2JS52 829 aa23.39■■□□□ 1.33
SREBF1-219ENST00000580540 MYT1Q01538 1121 aa23.39■■□□□ 1.33
SREBF1-219ENST00000580540 PHRF1Q9P1Y6 1649 aaKnown RBP23.39■■□□□ 1.33
SREBF1-219ENST00000580540 KTN1Q86UP2 1357 aaKnown RBP23.39■■□□□ 1.33
SREBF1-219ENST00000580540 USP19O94966 1318 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 GCP02774 474 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 TESK2Q96S53 571 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 SLC12A5Q9H2X9 1139 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 STRN4Q9NRL3 753 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 GLI3P10071 1580 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 USP47Q96K76 1375 aa23.38■■□□□ 1.33
SREBF1-219ENST00000580540 EVA1CP58658 441 aa23.36■■□□□ 1.33
SREBF1-219ENST00000580540 HDGFL2Q7Z4V5 671 aaPredicted RBP23.36■■□□□ 1.33
SREBF1-219ENST00000580540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.36■■□□□ 1.33
SREBF1-219ENST00000580540 SEPT12Q8IYM1 358 aa23.36■■□□□ 1.33
SREBF1-219ENST00000580540 SSH2Q76I76 1423 aa23.35■■□□□ 1.33
SREBF1-219ENST00000580540 SLC24A1O60721 1099 aa23.35■■□□□ 1.33
SREBF1-219ENST00000580540 CPSF1Q10570 1443 aaKnown RBP23.34■■□□□ 1.33
SREBF1-219ENST00000580540 SOX12O15370 315 aa23.34■■□□□ 1.33
SREBF1-219ENST00000580540 AKAP12Q02952 1782 aa23.34■■□□□ 1.33
SREBF1-219ENST00000580540 TTC21AQ8NDW8 1320 aa23.33■■□□□ 1.33
SREBF1-219ENST00000580540 NRAPQ86VF7 1730 aa23.33■■□□□ 1.33
SREBF1-219ENST00000580540 NRKQ7Z2Y5 1582 aa23.33■■□□□ 1.33
SREBF1-219ENST00000580540 FAM98CQ17RN3 349 aaKnown RBP23.33■■□□□ 1.33
SREBF1-219ENST00000580540 TMF1P82094 1093 aa23.32■■□□□ 1.32
SREBF1-219ENST00000580540 PUS7Q96PZ0 661 aaKnown RBP23.32■■□□□ 1.32
SREBF1-219ENST00000580540 TERF2IPQ9NYB0 399 aa23.32■■□□□ 1.32
SREBF1-219ENST00000580540 SPATA31A5Q5VU36 1347 aa23.31■■□□□ 1.32
SREBF1-219ENST00000580540 SPATA31A7Q8IWB4 1347 aa23.31■■□□□ 1.32
SREBF1-219ENST00000580540 CPDO75976 1380 aa23.3■■□□□ 1.32
SREBF1-219ENST00000580540 PIK3C2AO00443 1686 aa23.3■■□□□ 1.32
SREBF1-219ENST00000580540 USP35Q9P2H5 1018 aa23.3■■□□□ 1.32
SREBF1-219ENST00000580540 ZRANB1Q9UGI0 708 aa23.29■■□□□ 1.32
SREBF1-219ENST00000580540 ONECUT3O60422 494 aaPredicted RBP23.28■■□□□ 1.32
SREBF1-219ENST00000580540 CD163L1Q9NR16 1453 aa23.28■■□□□ 1.32
SREBF1-219ENST00000580540 NME9Q86XW9 330 aa23.27■■□□□ 1.32
SREBF1-219ENST00000580540 KCNH5Q8NCM2 988 aa23.27■■□□□ 1.32
SREBF1-219ENST00000580540 MON2Q7Z3U7 1717 aa23.26■■□□□ 1.31
SREBF1-219ENST00000580540 KRT27Q7Z3Y8 459 aa23.26■■□□□ 1.31
SREBF1-219ENST00000580540 A0A1W2PP64 1363 aa23.26■■□□□ 1.31
SREBF1-219ENST00000580540 CAMTA1Q9Y6Y1 1673 aa23.25■■□□□ 1.31
SREBF1-219ENST00000580540 SLIT3O75094 1523 aa23.25■■□□□ 1.31
SREBF1-219ENST00000580540 LARP1Q6PKG0 1096 aaKnown RBP23.25■■□□□ 1.31
SREBF1-219ENST00000580540 SPATA31A1Q5TZJ5 1347 aa23.25■■□□□ 1.31
SREBF1-219ENST00000580540 BRWD3Q6RI45 1802 aa23.24■■□□□ 1.31
SREBF1-219ENST00000580540 CDCA8Q53HL2 280 aa23.23■■□□□ 1.31
SREBF1-219ENST00000580540 NINLQ9Y2I6 1382 aa23.23■■□□□ 1.31
SREBF1-219ENST00000580540 EDC4Q6P2E9 1401 aaKnown RBP23.22■■□□□ 1.31
SREBF1-219ENST00000580540 ARHGEF25Q86VW2 580 aa23.21■■□□□ 1.31
SREBF1-219ENST00000580540 AATKQ6ZMQ8 1374 aa23.21■■□□□ 1.31
SREBF1-219ENST00000580540 LMO7Q8WWI1 1683 aa23.2■■□□□ 1.3
SREBF1-219ENST00000580540 USP31Q70CQ4 1352 aa23.19■■□□□ 1.3
SREBF1-219ENST00000580540 POLR3GLQ9BT43 218 aa23.19■■□□□ 1.3
SREBF1-219ENST00000580540 AXIN2Q9Y2T1 843 aa23.19■■□□□ 1.3
SREBF1-219ENST00000580540 COL5A2P05997 1499 aaPredicted RBP23.18■■□□□ 1.3
SREBF1-219ENST00000580540 TCP11L2Q8N4U5 519 aa23.18■■□□□ 1.3
SREBF1-219ENST00000580540 FAM182BQ5T319 152 aa23.17■■□□□ 1.3
SREBF1-219ENST00000580540 TOM1L2Q6ZVM7 507 aa23.17■■□□□ 1.3
SREBF1-219ENST00000580540 CCDC125Q86Z20 511 aa23.17■■□□□ 1.3
SREBF1-219ENST00000580540 CSB-PGBD3P0DP91 1061 aa23.16■■□□□ 1.3
SREBF1-219ENST00000580540 EIF4G2P78344 907 aaKnown RBP eCLIP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms