RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CABLES1Q8TDN4 633 aa20.91■□□□□ 0.94
SMARCE1-216ENST00000580419 NRAPQ86VF7 1730 aa20.9■□□□□ 0.94
SMARCE1-216ENST00000580419 CENPJQ9HC77 1338 aaPredicted RBP20.9■□□□□ 0.94
SMARCE1-216ENST00000580419 FAM83GA6ND36 823 aa20.9■□□□□ 0.94
SMARCE1-216ENST00000580419 L3MBTL2Q969R5 705 aa20.9■□□□□ 0.94
SMARCE1-216ENST00000580419 LMOD2Q6P5Q4 547 aa20.89■□□□□ 0.93
SMARCE1-216ENST00000580419 TRPM1Q7Z4N2 1603 aa20.89■□□□□ 0.93
SMARCE1-216ENST00000580419 NBPF8Q3BBV2 869 aa20.87■□□□□ 0.93
SMARCE1-216ENST00000580419 QRICH2Q9H0J4 1663 aa20.86■□□□□ 0.93
SMARCE1-216ENST00000580419 BRWD3Q6RI45 1802 aa20.85■□□□□ 0.93
SMARCE1-216ENST00000580419 ACEP12821 1306 aa20.85■□□□□ 0.93
SMARCE1-216ENST00000580419 PHRF1Q9P1Y6 1649 aaKnown RBP20.83■□□□□ 0.93
SMARCE1-216ENST00000580419 BLMP54132 1417 aaPredicted RBP20.82■□□□□ 0.92
SMARCE1-216ENST00000580419 PAK3O75914 559 aaPredicted RBP20.82■□□□□ 0.92
SMARCE1-216ENST00000580419 SEPT12Q8IYM1 358 aa20.81■□□□□ 0.92
SMARCE1-216ENST00000580419 BTG4Q9NY30 223 aa20.81■□□□□ 0.92
SMARCE1-216ENST00000580419 CPDO75976 1380 aa20.81■□□□□ 0.92
SMARCE1-216ENST00000580419 SBNO2Q9Y2G9 1366 aa20.81■□□□□ 0.92
SMARCE1-216ENST00000580419 USP19O94966 1318 aa20.8■□□□□ 0.92
SMARCE1-216ENST00000580419 PPIP5K1Q6PFW1 1433 aa20.8■□□□□ 0.92
SMARCE1-216ENST00000580419 SPATA31A5Q5VU36 1347 aa20.79■□□□□ 0.92
SMARCE1-216ENST00000580419 SPATA31A7Q8IWB4 1347 aa20.79■□□□□ 0.92
SMARCE1-216ENST00000580419 SRPK2P78362 688 aaKnown RBP20.79■□□□□ 0.92
SMARCE1-216ENST00000580419 SIN3AQ96ST3 1273 aa20.79■□□□□ 0.92
SMARCE1-216ENST00000580419 PRDM11Q9NQV5 511 aa20.79■□□□□ 0.92
SMARCE1-216ENST00000580419 SRCAPQ6ZRS2 3230 aa20.79■□□□□ 0.92
SMARCE1-216ENST00000580419 EVC2Q86UK5 1308 aa20.78■□□□□ 0.92
SMARCE1-216ENST00000580419 ROCK2O75116 1388 aaKnown RBP20.77■□□□□ 0.92
SMARCE1-216ENST00000580419 KIAA0232Q92628 1395 aa20.76■□□□□ 0.91
SMARCE1-216ENST00000580419 KRT27Q7Z3Y8 459 aa20.76■□□□□ 0.91
SMARCE1-216ENST00000580419 NLRP13Q86W25 1043 aa20.76■□□□□ 0.91
SMARCE1-216ENST00000580419 SSH2Q76I76 1423 aa20.76■□□□□ 0.91
SMARCE1-216ENST00000580419 THSD7AQ9UPZ6 1657 aa20.76■□□□□ 0.91
SMARCE1-216ENST00000580419 NRKQ7Z2Y5 1582 aa20.76■□□□□ 0.91
SMARCE1-216ENST00000580419 ABTB2Q8N961 1025 aa20.75■□□□□ 0.91
SMARCE1-216ENST00000580419 ZNF692Q9BU19 519 aaPredicted RBP20.75■□□□□ 0.91
SMARCE1-216ENST00000580419 CCDC9Q9Y3X0 531 aaKnown RBP20.75■□□□□ 0.91
SMARCE1-216ENST00000580419 USP6P35125 1406 aa20.75■□□□□ 0.91
SMARCE1-216ENST00000580419 CABP2Q9NPB3 220 aa20.74■□□□□ 0.91
SMARCE1-216ENST00000580419 LMO7Q8WWI1 1683 aa20.73■□□□□ 0.91
SMARCE1-216ENST00000580419 SPATA31A1Q5TZJ5 1347 aa20.72■□□□□ 0.91
SMARCE1-216ENST00000580419 NEUROD1Q13562 356 aa20.71■□□□□ 0.91
SMARCE1-216ENST00000580419 CABP1Q9NZU7 370 aa20.71■□□□□ 0.91
SMARCE1-216ENST00000580419 SLIT3O75094 1523 aa20.7■□□□□ 0.9
SMARCE1-216ENST00000580419 GCP02774 474 aa20.7■□□□□ 0.9
SMARCE1-216ENST00000580419 FAM98CQ17RN3 349 aaKnown RBP20.7■□□□□ 0.9
SMARCE1-216ENST00000580419 BARGINQ6ZT62 677 aa20.7■□□□□ 0.9
SMARCE1-216ENST00000580419 PUS7Q96PZ0 661 aaKnown RBP20.7■□□□□ 0.9
SMARCE1-216ENST00000580419 ZRANB1Q9UGI0 708 aa20.7■□□□□ 0.9
SMARCE1-216ENST00000580419 AKAP12Q02952 1782 aa20.69■□□□□ 0.9
SMARCE1-216ENST00000580419 CAMTA1Q9Y6Y1 1673 aa20.68■□□□□ 0.9
SMARCE1-216ENST00000580419 PLEKHG5O94827 1062 aa20.68■□□□□ 0.9
SMARCE1-216ENST00000580419 SF3B2Q13435 895 aaKnown RBP20.68■□□□□ 0.9
SMARCE1-216ENST00000580419 THRAP3Q9Y2W1 955 aaKnown RBP20.68■□□□□ 0.9
SMARCE1-216ENST00000580419 CPSF1Q10570 1443 aaKnown RBP20.68■□□□□ 0.9
SMARCE1-216ENST00000580419 SLC24A1O60721 1099 aa20.67■□□□□ 0.9
SMARCE1-216ENST00000580419 ZC3H6P61129 1189 aaKnown RBP20.67■□□□□ 0.9
SMARCE1-216ENST00000580419 TTC21AQ8NDW8 1320 aa20.67■□□□□ 0.9
SMARCE1-216ENST00000580419 TRIM26Q12899 539 aaPredicted RBP20.66■□□□□ 0.9
SMARCE1-216ENST00000580419 AATKQ6ZMQ8 1374 aa20.66■□□□□ 0.9
SMARCE1-216ENST00000580419 DISP2A7MBM2 1401 aa20.66■□□□□ 0.9
SMARCE1-216ENST00000580419 RGPD1P0DJD0 1748 aa20.66■□□□□ 0.9
SMARCE1-216ENST00000580419 PIK3C2AO00443 1686 aa20.65■□□□□ 0.9
SMARCE1-216ENST00000580419 TONSLQ96HA7 1378 aa20.65■□□□□ 0.9
SMARCE1-216ENST00000580419 C11orf95C9JLR9 678 aaPredicted RBP20.64■□□□□ 0.89
SMARCE1-216ENST00000580419 CHRNA2Q15822 529 aa20.64■□□□□ 0.89
SMARCE1-216ENST00000580419 NLRP6P59044 892 aa20.63■□□□□ 0.89
SMARCE1-216ENST00000580419 NUTM2GQ5VZR2 741 aa20.63■□□□□ 0.89
SMARCE1-216ENST00000580419 CARD11Q9BXL7 1154 aa20.63■□□□□ 0.89
SMARCE1-216ENST00000580419 ABCC6O95255 1503 aa20.63■□□□□ 0.89
SMARCE1-216ENST00000580419 COL5A2P05997 1499 aaPredicted RBP20.62■□□□□ 0.89
SMARCE1-216ENST00000580419 MON2Q7Z3U7 1717 aa20.62■□□□□ 0.89
SMARCE1-216ENST00000580419 USP54Q70EL1 1684 aa20.62■□□□□ 0.89
SMARCE1-216ENST00000580419 EVA1CP58658 441 aa20.62■□□□□ 0.89
SMARCE1-216ENST00000580419 KCNH5Q8NCM2 988 aa20.62■□□□□ 0.89
SMARCE1-216ENST00000580419 COL18A1P39060 1754 aa20.62■□□□□ 0.89
SMARCE1-216ENST00000580419 TTC21BQ7Z4L5 1316 aa20.61■□□□□ 0.89
SMARCE1-216ENST00000580419 BAG6P46379 1132 aa20.61■□□□□ 0.89
SMARCE1-216ENST00000580419 TCP11L2Q8N4U5 519 aa20.61■□□□□ 0.89
SMARCE1-216ENST00000580419 A0A0G2JS52 829 aa20.6■□□□□ 0.89
SMARCE1-216ENST00000580419 MYT1Q01538 1121 aa20.6■□□□□ 0.89
SMARCE1-216ENST00000580419 FAM196AQ6ZSG2 479 aa20.6■□□□□ 0.89
SMARCE1-216ENST00000580419 PARP4Q9UKK3 1724 aaKnown RBP20.6■□□□□ 0.89
SMARCE1-216ENST00000580419 STRN4Q9NRL3 753 aa20.59■□□□□ 0.89
SMARCE1-216ENST00000580419 CRB1P82279 1406 aa20.59■□□□□ 0.89
SMARCE1-216ENST00000580419 USP31Q70CQ4 1352 aa20.59■□□□□ 0.89
SMARCE1-216ENST00000580419 PARD3Q8TEW0 1356 aa20.58■□□□□ 0.88
SMARCE1-216ENST00000580419 NINLQ9Y2I6 1382 aa20.58■□□□□ 0.88
SMARCE1-216ENST00000580419 LARP1Q6PKG0 1096 aaKnown RBP20.57■□□□□ 0.88
SMARCE1-216ENST00000580419 ARHGEF25Q86VW2 580 aa20.57■□□□□ 0.88
SMARCE1-216ENST00000580419 TNS1Q9HBL0 1735 aaKnown RBP20.57■□□□□ 0.88
SMARCE1-216ENST00000580419 KTN1Q86UP2 1357 aaKnown RBP20.57■□□□□ 0.88
SMARCE1-216ENST00000580419 DEFB132Q7Z7B7 95 aa20.56■□□□□ 0.88
SMARCE1-216ENST00000580419 NFAT5O94916 1531 aa20.54■□□□□ 0.88
SMARCE1-216ENST00000580419 CDCA7Q9BWT1 371 aaPredicted RBP20.54■□□□□ 0.88
SMARCE1-216ENST00000580419 CD163L1Q9NR16 1453 aa20.54■□□□□ 0.88
SMARCE1-216ENST00000580419 TIMELESSQ9UNS1 1208 aa20.53■□□□□ 0.88
SMARCE1-216ENST00000580419 WDR17Q8IZU2 1322 aa20.53■□□□□ 0.88
SMARCE1-216ENST00000580419 PDE3BQ13370 1112 aa20.52■□□□□ 0.88
SMARCE1-216ENST00000580419 BCL9O00512 1426 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms