RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 TMF1P82094 1093 aa9.17□□□□□ -0.94
TRAF4-213ENST00000578917 HDGFL2Q7Z4V5 671 aaPredicted RBP9.17□□□□□ -0.94
TRAF4-213ENST00000578917 UNC5CLQ8IV45 518 aa9.17□□□□□ -0.94
TRAF4-213ENST00000578917 TERF2IPQ9NYB0 399 aa9.17□□□□□ -0.94
TRAF4-213ENST00000578917 SHPRHQ149N8 1683 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 ADGRB2O60241 1585 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 POLR3AO14802 1390 aaPredicted RBP9.16□□□□□ -0.94
TRAF4-213ENST00000578917 ATAD2Q6PL18 1390 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 A0A0G2JS52 829 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 EVA1CP58658 441 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 MYT1Q01538 1121 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 CDCA8Q53HL2 280 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.16□□□□□ -0.94
TRAF4-213ENST00000578917 BTG4Q9NY30 223 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 KIF1AQ12756 1690 aa9.16□□□□□ -0.94
TRAF4-213ENST00000578917 ATP7BP35670 1465 aa9.15□□□□□ -0.94
TRAF4-213ENST00000578917 RALGAPBQ86X10 1494 aa9.15□□□□□ -0.94
TRAF4-213ENST00000578917 SOX12O15370 315 aa9.15□□□□□ -0.94
TRAF4-213ENST00000578917 CHRNA2Q15822 529 aa9.15□□□□□ -0.94
TRAF4-213ENST00000578917 GJD4Q96KN9 370 aaPredicted RBP9.15□□□□□ -0.94
TRAF4-213ENST00000578917 POLR3GLQ9BT43 218 aa9.15□□□□□ -0.94
TRAF4-213ENST00000578917 SLC12A5Q9H2X9 1139 aa9.15□□□□□ -0.94
TRAF4-213ENST00000578917 KTN1Q86UP2 1357 aaKnown RBP9.14□□□□□ -0.95
TRAF4-213ENST00000578917 TRPM1Q7Z4N2 1603 aa9.14□□□□□ -0.95
TRAF4-213ENST00000578917 GCP02774 474 aa9.14□□□□□ -0.95
TRAF4-213ENST00000578917 STRN4Q9NRL3 753 aa9.14□□□□□ -0.95
TRAF4-213ENST00000578917 ARHGEF28Q8N1W1 1705 aaKnown RBP9.14□□□□□ -0.95
TRAF4-213ENST00000578917 USP47Q96K76 1375 aa9.13□□□□□ -0.95
TRAF4-213ENST00000578917 EIF4G2P78344 907 aaKnown RBP eCLIP9.13□□□□□ -0.95
TRAF4-213ENST00000578917 PUS7Q96PZ0 661 aaKnown RBP9.13□□□□□ -0.95
TRAF4-213ENST00000578917 TESK2Q96S53 571 aa9.13□□□□□ -0.95
TRAF4-213ENST00000578917 BRD4O60885 1362 aaPredicted RBP9.12□□□□□ -0.95
TRAF4-213ENST00000578917 SBNO2Q9Y2G9 1366 aa9.12□□□□□ -0.95
TRAF4-213ENST00000578917 TTC21BQ7Z4L5 1316 aa9.12□□□□□ -0.95
TRAF4-213ENST00000578917 VPS72Q15906 364 aa9.12□□□□□ -0.95
TRAF4-213ENST00000578917 USP32Q8NFA0 1604 aa9.12□□□□□ -0.95
TRAF4-213ENST00000578917 KIAA0232Q92628 1395 aa9.12□□□□□ -0.95
TRAF4-213ENST00000578917 KCNH5Q8NCM2 988 aa9.11□□□□□ -0.95
TRAF4-213ENST00000578917 USP35Q9P2H5 1018 aa9.11□□□□□ -0.95
TRAF4-213ENST00000578917 USP6P35125 1406 aa9.11□□□□□ -0.95
TRAF4-213ENST00000578917 RGPD8O14715 1765 aaPredicted RBP9.11□□□□□ -0.95
TRAF4-213ENST00000578917 TTC21AQ8NDW8 1320 aa9.1□□□□□ -0.95
TRAF4-213ENST00000578917 BCL9LQ86UU0 1499 aa9.1□□□□□ -0.95
TRAF4-213ENST00000578917 QRICH2Q9H0J4 1663 aa9.1□□□□□ -0.95
TRAF4-213ENST00000578917 CSB-PGBD3P0DP91 1061 aa9.09□□□□□ -0.95
TRAF4-213ENST00000578917 HSPA5P11021 654 aaKnown RBP9.09□□□□□ -0.95
TRAF4-213ENST00000578917 FAM98CQ17RN3 349 aaKnown RBP9.09□□□□□ -0.95
TRAF4-213ENST00000578917 NME9Q86XW9 330 aa9.09□□□□□ -0.95
TRAF4-213ENST00000578917 SEPT12Q8IYM1 358 aa9.09□□□□□ -0.95
TRAF4-213ENST00000578917 COL22A1Q8NFW1 1626 aaPredicted RBP9.09□□□□□ -0.95
TRAF4-213ENST00000578917 ATRNO75882 1429 aa9.08□□□□□ -0.96
TRAF4-213ENST00000578917 COG3Q96JB2 828 aa9.08□□□□□ -0.96
TRAF4-213ENST00000578917 ZRANB1Q9UGI0 708 aa9.08□□□□□ -0.96
TRAF4-213ENST00000578917 USP19O94966 1318 aa9.07□□□□□ -0.96
TRAF4-213ENST00000578917 SLIT2O94813 1529 aa9.07□□□□□ -0.96
TRAF4-213ENST00000578917 TOM1L2Q6ZVM7 507 aa9.07□□□□□ -0.96
TRAF4-213ENST00000578917 UPF1Q92900 1129 aaKnown RBP eCLIP9.07□□□□□ -0.96
TRAF4-213ENST00000578917 NINLQ9Y2I6 1382 aa9.07□□□□□ -0.96
TRAF4-213ENST00000578917 CPSF1Q10570 1443 aaKnown RBP9.06□□□□□ -0.96
TRAF4-213ENST00000578917 ITSN1Q15811 1721 aa9.06□□□□□ -0.96
TRAF4-213ENST00000578917 SF3B2Q13435 895 aaKnown RBP9.06□□□□□ -0.96
TRAF4-213ENST00000578917 LARP1Q6PKG0 1096 aaKnown RBP9.06□□□□□ -0.96
TRAF4-213ENST00000578917 CDK12Q9NYV4 1490 aaPredicted RBP9.06□□□□□ -0.96
TRAF4-213ENST00000578917 SPATA31A5Q5VU36 1347 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 SPATA31A7Q8IWB4 1347 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 A0A1W2PP64 1363 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 CPDO75976 1380 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 ONECUT3O60422 494 aaPredicted RBP9.05□□□□□ -0.96
TRAF4-213ENST00000578917 PDE3BQ13370 1112 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 KRT27Q7Z3Y8 459 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 ARHGEF25Q86VW2 580 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 TCP11L2Q8N4U5 519 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 RGS12O14924 1447 aa9.05□□□□□ -0.96
TRAF4-213ENST00000578917 AATKQ6ZMQ8 1374 aa9.04□□□□□ -0.96
TRAF4-213ENST00000578917 AMPHP49418 695 aa9.04□□□□□ -0.96
TRAF4-213ENST00000578917 GGNBP2Q9H3C7 697 aa9.04□□□□□ -0.96
TRAF4-213ENST00000578917 AXIN2Q9Y2T1 843 aa9.04□□□□□ -0.96
TRAF4-213ENST00000578917 EDC4Q6P2E9 1401 aaKnown RBP9.04□□□□□ -0.96
TRAF4-213ENST00000578917 SSH2Q76I76 1423 aa9.04□□□□□ -0.96
TRAF4-213ENST00000578917 SPATA31A1Q5TZJ5 1347 aa9.04□□□□□ -0.96
TRAF4-213ENST00000578917 TRPM3Q9HCF6 1732 aaPredicted RBP9.03□□□□□ -0.96
TRAF4-213ENST00000578917 ANKRD36BQ8N2N9 1353 aa9.03□□□□□ -0.96
TRAF4-213ENST00000578917 CCDC125Q86Z20 511 aa9.03□□□□□ -0.96
TRAF4-213ENST00000578917 NLRP2Q9NX02 1062 aa9.03□□□□□ -0.96
TRAF4-213ENST00000578917 TOPAZ1Q8N9V7 1692 aa9.02□□□□□ -0.97
TRAF4-213ENST00000578917 ALS2Q96Q42 1657 aa9.02□□□□□ -0.97
TRAF4-213ENST00000578917 FYB1O15117 783 aa9.02□□□□□ -0.97
TRAF4-213ENST00000578917 FAM182BQ5T319 152 aa9.02□□□□□ -0.97
TRAF4-213ENST00000578917 LTV1Q96GA3 475 aaPredicted RBP9.02□□□□□ -0.97
TRAF4-213ENST00000578917 THRAP3Q9Y2W1 955 aaKnown RBP9.02□□□□□ -0.97
TRAF4-213ENST00000578917 USP31Q70CQ4 1352 aa9.01□□□□□ -0.97
TRAF4-213ENST00000578917 PPM1GO15355 546 aaPredicted RBP9.01□□□□□ -0.97
TRAF4-213ENST00000578917 BARGINQ6ZT62 677 aa9.01□□□□□ -0.97
TRAF4-213ENST00000578917 CARD14Q9BXL6 1004 aa9.01□□□□□ -0.97
TRAF4-213ENST00000578917 PANK3Q9H999 370 aa9.01□□□□□ -0.97
TRAF4-213ENST00000578917 CGNL1Q0VF96 1302 aa9.01□□□□□ -0.97
TRAF4-213ENST00000578917 FBLN1P23142 703 aa9□□□□□ -0.97
TRAF4-213ENST00000578917 ANKRD24Q8TF21 1146 aa9□□□□□ -0.97
TRAF4-213ENST00000578917 KNSTRNQ9Y448 316 aa9□□□□□ -0.97
TRAF4-213ENST00000578917 CD163L1Q9NR16 1453 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms